Pser000867.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- bab2
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000001.1:11396535-11403933[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-09 8.9e-06 24.8 0.0 4 35 299 329 296 337 0.87 2 2 2.6e-10 4.4e-07 29.0 0.0 1 40 465 504 465 508 0.92
Sequence Information
- Coding Sequence
- atggatcCACCACAGCGATTTTGTGTTCGGTGGAACTCATACAAATCTAATTTGCAAACGGCTTTTCCGAAATTGTTAACAAGTGAACACTTTGTGGACGTAACATTGGCGTGTGAAAAGCAATTCATAAAATGTCACAAGATAGTTTTATCTGCATGCAGCGTGTATTTCGAAACTCTTCTAGTCAATAATCCCTGTCAACATCCCATTATCTTCATGAAGGATGTAGAATTTTGGGAAATTAAAGCATTAGtcgaatttatgtataaaggTGAAGTGAACGTGTCGCAAAATCAATTAGATAGTCTTTTGAAATCTGCTGAAAGCCTGCAAATTCGTGGTCTTTCGGGAACCAAACAGTTTGCTAATTTCGATCAATCCGAAGAAAGTCGAGAAGATTGTATCAGTGACGGTAAAACTAAAAGGAATAAACACGACAGTGAGGAAGAGGGACAAGAAGAAGTGagcaggaaaaaaaggaaaaaaggagacGATGATGACAAATATATTCAGATTACATCTGTCCAACAGGATGACAGCAGTAAGAGTAAGACAAGCGATGACAATGACAATGATGAGAATCAGGTTATAAAGCAGGAAAGTATCGAGATTGAAGATTACCAGTTTGATAACTCTGAGATGGGAGCAGGTGACGATGGAGACGAAGACGAATGTTATCATCGAGGTGCATTTCGAACTGGTCGCAATATCAGCAGTGACATGGCAGGTCCCAGTGGAATTTCAGatGTGCTGACTATAGAGGATGAGGCATTGATTTGTAAGGAACAACCGGACGATGAACCAAACAGTGAAAGTAATTTCGTATCGACAATTCTGAAAGTGAAGAAGACGTCTTCTGCACGGAGGACCTGCTATAAGCAGTACACGATGGCGAACATGTGGGCAGCACTCGAAAGGATAGAGCAGGGACTGAGTGTCTACAGGGCGTCTATAGAGTATGGAGTACCCAGAAAAACGCTTAGAAATTGGATGAAGAAATATAACATAATGAATATTTGTTCGTTAGCGCTAAATAACGTTGAATGTGTAATGGATCAGGAGAAGGCGAAATCGGAGGTTAATCCGGACAgaagttcaattaaatgtcAGGTGAGGCATCAAGAGCACAATTACACGAATCCACCAAAGGAAGAAGCTCAGAAGACAACGACCGTGCCTAAAGAAGAGGCGGCTAATTATCAAACGAGATCGTCATCTTCGTCGGGGGATAGCAGCAGATCAAAGAATTCCAGTGTCAAGGTGTCGTCACACAGCAGAAGCGAAACTAATTCAACGAGACAAACGTCACAGCCGAGTTCATCTGTGCGAAATCTCTCCGTGGAAGTGAAGagtcgagtaataaaaaaggacGTTTTCAACCGAATCAGAAGATCCGAGGAAGAATTGCAGAAAGCTGCCGAAATGGTTAGAGGTGGAATGACGTTTCAAACGGCTTCCGATACTTTCAACATTCCGATTTCAACAATCAGattctACATGGCCCGAAGAGGAATTCTGCCGCAACGACGAAGAGGAAGAGGTTCAAGCGGAGTTCGCGACGACGACTTAATACATCCACCTTTTGAGATAATACACTACAGACTTCCGGACATCGACAAACCAGTTTGA
- Protein Sequence
- MDPPQRFCVRWNSYKSNLQTAFPKLLTSEHFVDVTLACEKQFIKCHKIVLSACSVYFETLLVNNPCQHPIIFMKDVEFWEIKALVEFMYKGEVNVSQNQLDSLLKSAESLQIRGLSGTKQFANFDQSEESREDCISDGKTKRNKHDSEEEGQEEVSRKKRKKGDDDDKYIQITSVQQDDSSKSKTSDDNDNDENQVIKQESIEIEDYQFDNSEMGAGDDGDEDECYHRGAFRTGRNISSDMAGPSGISDVLTIEDEALICKEQPDDEPNSESNFVSTILKVKKTSSARRTCYKQYTMANMWAALERIEQGLSVYRASIEYGVPRKTLRNWMKKYNIMNICSLALNNVECVMDQEKAKSEVNPDRSSIKCQVRHQEHNYTNPPKEEAQKTTTVPKEEAANYQTRSSSSSGDSSRSKNSSVKVSSHSRSETNSTRQTSQPSSSVRNLSVEVKSRVIKKDVFNRIRRSEEELQKAAEMVRGGMTFQTASDTFNIPISTIRFYMARRGILPQRRRGRGSSGVRDDDLIHPPFEIIHYRLPDIDKPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01251183;
- 90% Identity
- iTF_01251183;
- 80% Identity
- iTF_01251183;