Pvan015265.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- zfh2
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:1439783-1455137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.33 15 6.3 0.3 2 23 241 263 240 263 0.92 2 10 0.0002 0.0092 16.4 1.4 2 23 545 567 544 567 0.96 3 10 5e-05 0.0023 18.3 0.7 1 23 599 623 599 623 0.92 4 10 0.027 1.2 9.7 0.2 2 23 1239 1261 1238 1261 0.96 5 10 0.26 12 6.6 1.5 1 23 1327 1352 1327 1352 0.90 6 10 0.0068 0.31 11.6 0.6 1 23 1365 1387 1365 1387 0.95 7 10 0.00048 0.022 15.2 1.4 2 23 1394 1416 1393 1416 0.94 8 10 0.044 2 9.0 0.3 1 22 1484 1505 1484 1508 0.86 9 10 0.0076 0.35 11.4 0.1 1 23 1581 1605 1581 1605 0.93 10 10 0.00034 0.016 15.6 2.8 1 23 2270 2292 2270 2292 0.98
Sequence Information
- Coding Sequence
- ATGATCACAATCAATGCAAACGCTCTCGCTAAATCGATTCAATTTGACGGCCGAGCAATCACGCTCGGCTCAGGCACATCGGCCTATGTTCCATCGTCGCCAACGTCTGTATCGCCCTCACAAACTCCCGTCACAACAGCAACCTCAACTGATATTAATTTGAATGTGTTAAGGAGTAATAGTAGCACACAATCATCACCACATTCGCACAACGACAGCGATTCGCATAGGAATGAAGAGCAGGCACTGCTAAAGCAAAACGACATGCCACCACCAACACCAGGTTCACCATCGCCACGCAAAAGGCGACGAAAGCGTGACGATCCACAAAATTGTGTTACAAATTCTGAGGAATACGATTCAGACGAGGCGTCGCCATCATCGTATGCCGAAGTGGAGAGATTTCAGGGCAAAGTTGTTTATAATTTAGATGGAAAAGCTTACATTATCGACTCAGAGAATGAGCTGCCATTGCAATTAAACGATAGTAGTATTAAAGATGTTTCACAATCAAATAATCCCAAAATTCACTCATTTCGCGTAATTTCGTCACGCGATGCGACAATGAATCAGGCAGCATCGACACCAACGCGTATTACCTCACCGACAGCAGACTCACCGAGATCGACGCCCTCAcatcagcaacaacagcaacagctgGATAGTAGTGACGAGTTAAAGGATCCAAGCATGTCAAGTCATCGTCAGAAACCAATTCTCATGTGTTTTATATGCAAGTTGAGTTTTGGCAATGCAAAACTTTTCTCAAGCCATGCAAGCAGCGAGCACAAATTAACTTtgaatgataatgaaaaaatgctGCTATGTCACGAGTATTCATCAGctatcatacaaaaaaatgctGAAGATGTCTCGCAGATCTCCTTCCTAGAGCCACTCGATGGCAGTCGAGCTATGTCACTTGCCGGTGATGCTATCGATtctgataataataataatagtaataatgAGAATGATGGGACTGAGAATTTAGCTGATGAGGTAGACAAAGATGGAACAGCAAGTGATGAACATCATCAGCATCCGAGGCTTACGCCGAAATCATTGGCATCATTACAAAACCCCATCAATAGTGCTGCCAGCGTCATTCAACGTCTTGCTGGCGATTTCAAGTTCCTAAACTCGCAGGCCGATCTCTCACAGCTTACGTCGCTGTTGGAGCAGCACAAGACACTCAATGAGTTCCTAGCACAACAGCGACTTGCATGTCCCGAGCACGCTGATGCGCCAAATCCTAATGAAATTGATTGCAAAAATTGCGAATTCCTCAACATCAGTCAAATGTCACCAATGCGTAGCGCTTCAAAATCACCGATGAAAGGCTACGCACATGAGTCAAATGCATCATCAAAAACTTCTTCGCCAATCACATCGGCAACGCCAAATTCACAACAGCAGCTTAGTCAGCTGCAACATCAAATGGGCCAACAGCAGGCTGGTGGTATCAATACTTCACCAAGtatGTCAAATTCATTCACAATCGGTGCATGTCCTGATCATATGAATGGTCGACCTATTGGTGTTGAATGTGCAAgatgtGAAATTCTTCTTAACTCGGCACGTTTAAATAGCGGTCAACAAATATCAACGAGAAATTCCTGCAAAACCCTCAAATGTCCACAGTGCAATTGGCATTACAAATATCAGGAGACACTTGAAATTCatatgagagaaaaacatCCAGATGGTGAAAGTGCTTGTCATTTTTGTCTTGCaggtgCTGCACATCCACGACTTGCACGTGGTGAATCATACACTTGCGGTTATAAGCCATATCGATGTGAGATTTGCAATTATTCGACGACAACCAAAGGCAATTTATCGATTCATATGCAGAGTGATAAGCATTTAAATAATGTACAAGAGCTCAATAATTCACAGGGCatgaatgTCGCACCACCACAAGAAATTCGTTCAACACCTCAACCTAGTCAACCACCATCGATTCCATCAGCACCATCGACACCACAACTGCCACCGCAACCAAGTAAACCAAAGCCAAAGCCCAGTTTTCGATGCGAACCATGTTCATATGAGACACCGAATGCACGCAATTATCGAATTCATGAAACAAGCGAGAAACATACTCATAATCTTGCTGTGGTACAATGCAACATAAAGAGGCTGCAATCACATATGGaatcatttttgaaacaacatCCAAGTGGTGCTGGTATGAATACGCTTGGCTTACCTGGCATAGAACCATCAAATACTGGTCATTTACCTGGTGCTGCATTAGCAGATCTTGCATATAATCAAGCATTATTAATTCAATTGTTACATCAAAATAATGCACCTGCTGGCGCATTTTTACCATCAATGTTACAACAAcaagctgctgctgctgcacaGACAAATCAACAGAGTCCATTGCACTtccaacagcaacaacaacaacaattaaaTGGTACCAATAGTCAAGAAATTGATCAAGGACTCAATCCTGACACATTGGAACCACCATTCGAACAAGATTTTAATGCCGCCTATCATTTCTCGTGTCTCATCTGctcaaatttcaatacaaaCGATCTGGACGAACTGAACAATCATATTAATGAAGATCGATCACGATTAAGCTTCCCGCAAGAGTTTATTGTCGtggtaaataataataactatACATGTCGACTATGCTGCTATAAAACACATCTCAAGGCCAATTGTCAACTACATTGCAAGACTGATAAGCACTTGCAACGTGTTAATTTTGCCAATCATATTAAACAAgGAGGACACCgcaatgaatataaatttgattatgtcataaattcaacaacaaataataacaattacAACATAACACAGCTTAAATGCAATTGCTGTGATTATTATACAAATTCTATACAGAAGCTCAACTGTCATACACAAAATGTTCGTCATGAAAGTatgaaagcaaaatttaatcatcTTCTGCAATTGtttaaagacataaaaatggaaatgatgGAAGGTCAAGATGTCAACATAAGCAAAGCTCTGCTATGTCAATTGtgcaatttcaaatcaaataatCTTCTTGACATGGTCAAGCATAATAAGAGTCTGAGACATATCCAAATTGAGCAAATTTATTGTCTACAAAGACGATGTGAAAGTCTTGAATCAATTGaattgagtgaaatttatCAACTTGTTGATGaTGTCAATTTAGATTCACCGCACGATTTCTCAAAGGACGATGAGAAACCATCACCATCACCATCAttacaacagcaacagcaacaacagcaggcATCAAAAGATCAAGATTTACCAAATCCATTAGCAATGCTTAAAATGATTCCATTTGATCAACTTAAAGCAATTGCAGCAAATCTTCCACAATcacaaattgtttttaaatgcaGTCAATGTGATCATTTGGCAGAATTAAAGCATGAAATGGATCAACATTTTGAATCATGTCATCCAAGTATTGAATGCATGTCCATTGCACTTCCATCGATTTCTGCATTAATGGCTGCAGCAGCACAATCAAAAGATGAtagtaaaaatgatgatttaaatgataaaatgttGGATGATAGCATGGATAAGAAAGATACTGATGTAATGACAATTGAACCAGATATTGATGGTGTTATGATAAATAATTCGTCACGCTCGTCATCAGCTGTTTCAATGTTGGAAGCTGAAGAGAAATCAACACCTAAAAAACCATCACCAACACCAGAAGAATATTCTGTCATGTGTCCATTATGTCAAGATACATttacagaaagaaaaacattagAACAGCATGTTATGACTGCACATAGTGTCAATGCAGAAGGTCTTAATCGTTTATTGCAACTTGTCGATACAAGTCATTGgataaataataagaaaagtcCATCAACAGCTGGTGGTGATTATGAATGCTTGGTATGCAGTGACACATTAAAAAGTATGAATGATTTATTGATGCATGCAACAGATCATCAACATTTTAGCATCACCGGTCTCAATCAATTCAGTTGTTTGCTCAAAAGTTGTCCACAAAAGTTCACAAGTGAAACTCAAGTACAACAACATTTTAGAACATCACATTTAAATATTGTCATAAGTGAACGTCATGTATATAAATATCGATGTCTAATGTGTCCACTGGCATTTAAaactgaagaaaaattaaataatcataatcTTTATCATACAATGCGTGAAGCAACAAAATGTAGCATTTGTACAAGAAATTTCCGTAGTACAACATCATTGCAGCGACATATCGAGCAAGTTCATGGACAATCAGTTACTGATTTAAGTAAATCAAGTGAATTAACTGATGATGAACGAATGCAAACACCAAACGATGAACAATTGtcaaatgatgaagatgatgatcaAATGCCAGATGCAAAACGTTTCAAAGCAATTGGTCGTAGTGGTGAAAAAGTTGCAGCAAATTATTCATtggaaaaatatcatgatCCAAATCGTCCGTACAAGTGTGAAGATTGTTTTGAATCTTTTACACAAGCAAATATTCTTGCAGTTCATAAAAATAGCGTTTCACATTTGCATCGTGTTAAGAAAAAGCAAGGTGAAACTCATAGTGGAAGTTCAACACCAGCATTAGGAACAAGTCCAAATCaaatatcaaatgaatttgatCGACGTTCTGTggattttgatagaaaatctattgattttgaaatggaaattaatAACTCAATGgaaggaaataaaagaaaggtATCAACTGATAATGATTATGATAGTCcaaagaaaagatttaaatgcGATATTTGTAAggTCGCTTATGCACAAGGATCAACTCTTGATATTCATATGAGGAGTGTTGGTCATCAAGCTAAAGCAAATCGCATAatgcagcaacaacagcaattacaacaaggACCATCGTCAACACCAACTTCATCAACATCAAATCCACAAGATTTACTAGCACAACAACAGCCATCaaataatggaaatttatcACCAAAACTTCCTAAtgcaaataataatcaaatgtATAAAGCATTGCTAGAAAATTTTGGTTTTGATATTGTGAAGCAAttcaatgaattaaataaattgccaGGAACaccaaataaaaatggaaatgcTGATGataaaaaggatgaaaatgaAGCTTTGGATTttacacaacaaaaaaacattGCAGAAGAATTACTTGCCGATCCGATGAAGCTTTTAAATGCTGAATTGCTTGCAGCACAACAAAAGCAAAATGCAGAACAACAAAAGTTTGATCCAGCAATGCTTGCACAACGTTTTATGGAGCAACAATTTTTGGCACAATTTCCACAATTTGCTCAAAGTCTTCAAAGTCTTAATGCAGGCAATGTGCCAATGAATACAATTGAAATGCTCAATTTAATGCAATTCCATCATTTGATGTCTCTCAATTTCATGAACCTTGCACCGCCATTAATATTCGGTGGCGCACAACAAGGCAATGTTTTATCACCAGGTGCATCAACACCAAATTCAGTCCTTGCACCGCCAAAACCAGTTGTTCCTGATGTTCCAGTCTCACCAGTTGCAGCATCAACACCAACTGCTCTCTCATTACTCGCTCAACAGCAACAGACACAAGCACAATTGCAAGCACAACAACAAGTAAAGAAAAACAGCAGAAAGGATCAATTTGTTGATACATGGAATAATGGCATTAATGACGATCCATCTGGTTCGTTTCAGGCATGTGCAAATCAAAAACGTGCTCGTACAAGAATCACTGAtgatcaattgaaaattttacgatCACATTTTGATATCAATAATTCACCAAGCGAGGAGAGTATCATTGAGATGAGCAAGAAAGCTAATTTACCGCAAaagGTTGTAAAACATTGGTTCCGTAACACATTATTCAAAGAGCGACAACGCAACAAAGACTCACCCTATAATTTTGCAAACCCACCATCGACAACTCTAAATCTTGAAGAATATGAACGTACAGGACAAGCAAAAGTTGTCCCTTTAggcgaaaatgaaaaatcacaaaGTGCAGCAAATTCAATGCTTTCAACTcttcaacaacagcaacagaaaCTTCAAgaagaacaacaaaaattgcaagaacaacagcaaaaatttcttcagcaacaacagcaagcTTTTAATTTGAGCCAAACTGGACCCGCATCATTTCCTGATCTTCGACCAGTTTCACAACCATCAAGTACAACTAGCAATGAACGCGatgattcattcattaaatctGAACCAATGGAAGAAGGCGACAATGTTGACAAGCACAATGAAAGTGTCGAATATGAAATTGAGCGATTTCGTCAGCAACAAGCACAacaacaattgaattttttcaattcatacGAGACAAAATCAGAAAGTGGCAGCAGTGACATTTTGTCGAGACCACAAACACCAAATAGCTTGTACAATAACATCAATGAAGTCATAAATCAACAAATTGATAGTATTCcaacaaataatattttgagtGCTGGAAATATGAATCAAATGGGCccaccaaaaaaatttcaattgaataaaatttttgataaaagttatGAGTCAAATTCAAGTTCATCAAATTCATCAACATCAAGTGGAAAGAGAGCAAATAGAACGAGATTCACTGACTATCAAATTAAAGTATTGCAggaattctttgaaaataattcttatcCTAAAGATAGTGATTTGGAATATTTGAGTAAATTGTTGCTGTTGTCACCAAGAGTTATTGTTGTTTGGTTCCAGaatGCTCGCCAAAAACAGCGAAAAATCTATGAAAATCAACCAAATACAACAAAcAGCACATCACCTTTTGagaatgatgaaaagaaagcCGGTTGCATAAATTACACATGCAAAAagtgcaatttaattttccaacgCTACTATGAGCTCATAAGACATCAGAAAAATCATTGCTTCAAAGaggaaaacaacaaaaaatcgGCAAAAGCTCAAATTGCAGCAGCACAAATTGCCCAGAGCTTGAGCAGTGAAGACTCGAATTCAAGTCTCGAAATTAATCACGCAAGCAATTTATTAGcAGCCGTTGGATTTCCACCAGCAATCGGCGCCAATCTTGCCATGTCGCAATCAACTGCTGGACAATTTCGGAGTGGAAGTGCCGCATCAGGCATTGCACCCGAACTTTGA
- Protein Sequence
- MITINANALAKSIQFDGRAITLGSGTSAYVPSSPTSVSPSQTPVTTATSTDINLNVLRSNSSTQSSPHSHNDSDSHRNEEQALLKQNDMPPPTPGSPSPRKRRRKRDDPQNCVTNSEEYDSDEASPSSYAEVERFQGKVVYNLDGKAYIIDSENELPLQLNDSSIKDVSQSNNPKIHSFRVISSRDATMNQAASTPTRITSPTADSPRSTPSHQQQQQQLDSSDELKDPSMSSHRQKPILMCFICKLSFGNAKLFSSHASSEHKLTLNDNEKMLLCHEYSSAIIQKNAEDVSQISFLEPLDGSRAMSLAGDAIDSDNNNNSNNENDGTENLADEVDKDGTASDEHHQHPRLTPKSLASLQNPINSAASVIQRLAGDFKFLNSQADLSQLTSLLEQHKTLNEFLAQQRLACPEHADAPNPNEIDCKNCEFLNISQMSPMRSASKSPMKGYAHESNASSKTSSPITSATPNSQQQLSQLQHQMGQQQAGGINTSPSMSNSFTIGACPDHMNGRPIGVECARCEILLNSARLNSGQQISTRNSCKTLKCPQCNWHYKYQETLEIHMREKHPDGESACHFCLAGAAHPRLARGESYTCGYKPYRCEICNYSTTTKGNLSIHMQSDKHLNNVQELNNSQGMNVAPPQEIRSTPQPSQPPSIPSAPSTPQLPPQPSKPKPKPSFRCEPCSYETPNARNYRIHETSEKHTHNLAVVQCNIKRLQSHMESFLKQHPSGAGMNTLGLPGIEPSNTGHLPGAALADLAYNQALLIQLLHQNNAPAGAFLPSMLQQQAAAAAQTNQQSPLHFQQQQQQQLNGTNSQEIDQGLNPDTLEPPFEQDFNAAYHFSCLICSNFNTNDLDELNNHINEDRSRLSFPQEFIVVVNNNNYTCRLCCYKTHLKANCQLHCKTDKHLQRVNFANHIKQGGHRNEYKFDYVINSTTNNNNYNITQLKCNCCDYYTNSIQKLNCHTQNVRHESMKAKFNHLLQLFKDIKMEMMEGQDVNISKALLCQLCNFKSNNLLDMVKHNKSLRHIQIEQIYCLQRRCESLESIELSEIYQLVDDVNLDSPHDFSKDDEKPSPSPSLQQQQQQQQASKDQDLPNPLAMLKMIPFDQLKAIAANLPQSQIVFKCSQCDHLAELKHEMDQHFESCHPSIECMSIALPSISALMAAAAQSKDDSKNDDLNDKMLDDSMDKKDTDVMTIEPDIDGVMINNSSRSSSAVSMLEAEEKSTPKKPSPTPEEYSVMCPLCQDTFTERKTLEQHVMTAHSVNAEGLNRLLQLVDTSHWINNKKSPSTAGGDYECLVCSDTLKSMNDLLMHATDHQHFSITGLNQFSCLLKSCPQKFTSETQVQQHFRTSHLNIVISERHVYKYRCLMCPLAFKTEEKLNNHNLYHTMREATKCSICTRNFRSTTSLQRHIEQVHGQSVTDLSKSSELTDDERMQTPNDEQLSNDEDDDQMPDAKRFKAIGRSGEKVAANYSLEKYHDPNRPYKCEDCFESFTQANILAVHKNSVSHLHRVKKKQGETHSGSSTPALGTSPNQISNEFDRRSVDFDRKSIDFEMEINNSMEGNKRKVSTDNDYDSPKKRFKCDICKVAYAQGSTLDIHMRSVGHQAKANRIMQQQQQLQQGPSSTPTSSTSNPQDLLAQQQPSNNGNLSPKLPNANNNQMYKALLENFGFDIVKQFNELNKLPGTPNKNGNADDKKDENEALDFTQQKNIAEELLADPMKLLNAELLAAQQKQNAEQQKFDPAMLAQRFMEQQFLAQFPQFAQSLQSLNAGNVPMNTIEMLNLMQFHHLMSLNFMNLAPPLIFGGAQQGNVLSPGASTPNSVLAPPKPVVPDVPVSPVAASTPTALSLLAQQQQTQAQLQAQQQVKKNSRKDQFVDTWNNGINDDPSGSFQACANQKRARTRITDDQLKILRSHFDINNSPSEESIIEMSKKANLPQKVVKHWFRNTLFKERQRNKDSPYNFANPPSTTLNLEEYERTGQAKVVPLGENEKSQSAANSMLSTLQQQQQKLQEEQQKLQEQQQKFLQQQQQAFNLSQTGPASFPDLRPVSQPSSTTSNERDDSFIKSEPMEEGDNVDKHNESVEYEIERFRQQQAQQQLNFFNSYETKSESGSSDILSRPQTPNSLYNNINEVINQQIDSIPTNNILSAGNMNQMGPPKKFQLNKIFDKSYESNSSSSNSSTSSGKRANRTRFTDYQIKVLQEFFENNSYPKDSDLEYLSKLLLLSPRVIVVWFQNARQKQRKIYENQPNTTNSTSPFENDEKKAGCINYTCKKCNLIFQRYYELIRHQKNHCFKEENNKKSAKAQIAAAQIAQSLSSEDSNSSLEINHASNLLAAVGFPPAIGANLAMSQSTAGQFRSGSAASGIAPEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319529;
- 90% Identity
- iTF_01249895;
- 80% Identity
- iTF_01249895;