Pvan013790.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031379.1:24464081-24472986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 5.3 7.7 2.9 1 22 456 477 456 480 0.91 2 13 0.0045 0.21 12.1 1.0 3 21 540 558 538 559 0.92 3 13 0.15 6.7 7.4 0.4 3 23 578 599 576 599 0.95 4 13 0.00071 0.032 14.7 1.0 1 23 604 628 604 628 0.93 5 13 0.74 34 5.2 0.1 2 23 650 672 649 672 0.96 6 13 0.6 27 5.4 0.0 1 21 677 697 677 698 0.92 7 13 6.9 3.2e+02 2.1 0.8 1 16 832 847 832 854 0.79 8 13 0.00096 0.044 14.2 2.9 2 23 867 887 866 887 0.96 9 13 1.4e-05 0.00066 20.0 0.4 1 23 893 918 893 918 0.95 10 13 0.046 2.1 9.0 2.3 1 23 931 953 931 953 0.92 11 13 3.1 1.4e+02 3.2 1.8 1 23 992 1016 992 1016 0.93 12 13 0.00011 0.0049 17.2 6.3 1 23 1023 1045 1023 1045 0.98 13 13 0.00099 0.045 14.2 3.3 1 20 1053 1072 1053 1074 0.95
Sequence Information
- Coding Sequence
- ATGGAACTTGTAGAGGATGATTCTCACTTATGCATTCGTTGTAAGGAGACGATAATTGGATTGCAAAATTATGTTAATCATCGACAGAGCAATTGTGGTGCGCAAGCAAAGTCTTCATCATcaaagcagcagcagttttcttcgaatttttcttttcttgactCGCATACTAATAAGAAAATGCAAAGTTATGAACACTTCAATTTTGGTGACGAACGAGAGATGGAAGAAGATGATGACGAAGAGGAGGAATTAATGGAAGAAGATGAGGATGAAGAAAGTGATGATTCTGAGATTAGTGGCGTAGAACAGAATAACAAATCAACCGAATCAGAGTACAAAGAATatgattatgattttttttcttcacttgaGCTGCAATATAtgtcaaaaaatagaaatagcccagcaacaacagcagctcGTGATAGCGGTGGTAAAAAGTTTAATCATCATCGTATTATGACACGAAAGGCAACGGCTGCTGCGATAATGGCACAAAATGGCGATGAATGGATTGACGACACGAGCGTTGGTATAAACAAGAAACGAGATTATggaaaatattatcaaaatgaGTCGAATGAGTCAGATTCGGACGATTCAGAACCAGCAACAGCACCGCCGCGTAATTACACGCGCGGAAAATGGAAGCCAGGATCACAATGGAAATCTACAACAAATTGGGATGAGAATGAGTCAGATTTGGATAAATCTTTTGATGATACAAATCCACCACCTCATCATACACAAGGTAAATGGATACCAGGTACAAAAATTTCCCGACTTGAATTTAAGGACGagaaaattgatgagaaaagTGAACGCGATAGTTTCTGGTGTCGATGGTGCAGTCGAAATCTCGCAACGAGAGCAATTTATGAGCGTcatttaaagtcaaatttacataaaaagcGAACACGTCAGCAGAATGAATTGGAGGGCGCAGGTGAAAAACTCAATGAACTCTCGACACATTTCGATGAACGAAAGAAGAAGTCCCTCGAGGAGGAGAAGATAATCGAAATCGAGAGTGAAATTCTTGATCGGGCAACAGCTACATCAACGCCCATCACACGAACGACACATGATGATATCGATGACGATGGTGCGAGCAATAATGTGTATAACAGTGCGTCAGAGGaggagcagcagcagcagcatcagaAACTCGGcataaaaaagagcaaaaaatttcgatcACGTACGAAAATAACATGTGAGGAGTGTGATATGAAATTGCCAGTTCATTTATTTGGCTGCCATTTGATATCACATTTTCACTATCGAAAAATGCTCTTGAATCCCAAAAAATCCTTCGACACTGTTCTCaataatttccataaaattgtGATACAATCGCCCTTTCAGTGTCATCCATGTAAATTCTATTTCAATACTCGGGAAGAGTTTACGCGACATTGGAATTCAATAGAGCATACAACGACTGTCAGTAAGCTCGTTGGtgggaaatttttatgttcatcgTTTTGCAAATTTGAATGCGTATCGAATGCCGAAATGACGGAACATTTAGAAAGTGCGGAGCATCAACAAGTTGTTACTTTGATCAATCGCTCCAAACCGATTATAATTCGGTACATAACGCGACTTTTTTGCCCTCACTGCCAACAAGAATTCCGTTATAATATTCAATTAATGCGACATTCAAAGTCATGCGAGCTCAAGAAAAtggataaatttcaattcgatGCTGGCGCGACATATGGTTGTGATGTGtgcgaaaaatttttccaatccGGTCTTTCACTACAAAAGCACAAAATTAAGGCTCATAAAGTCTCGATTTTCTTCTGTTCTGAGTGCCAATTGACGTTTAATAGAGCGAGTGAAGCTAAGGCACACCGACGTACAAATCAGCACAAAATGATGGCGATAAGAAaacgaattttaaatgatCCACATATACGtgaacaaatgaaaaagaaatgccAGTTTTGTGGTCTAGAACTGATGGATATAATTGAGTTAAAAGagcatataaatataaaacatcCAGAACGTAAATttagtTGTGGACGTTGTGGAATGAAGTTTGCAATAGCTCAGGAAATTTCTAGACACGTTCGAGATAAATTATGCAAGTTTTATAACACGAACAGAGCTGAGCAGTCAACGACGTGTACTATCACGTCTAATGAAGGAGGAACTGAAAAAGCACCAGAAGTAGAAGTTGAAAGTGCTGAGACATCAACATCGAAACAAACTTTTGCCTTAATTACTTctgattcaattaaatatcCAAGTACGGAAAACGATGATGATAAAGTTCATGTGACTACAGTTGCCAATgacgaagaagaagaaagtcCATCTCAAGGCATAGAAATGGACAATTTCGATCTACTATCATCTGCATTCCAAATAAGCAATGTAACAAATAATGAGACAGATGTAGATGATGACAATGAGTTTGGAATGATAATTGGtgaaattgacaataaaatgGATGgacaaattgttgaaattcttttcactTGCAAAATTTGCGAATTTAgcaCTGAATCCCATGCtgagtttttatttcatgaaattctCCACGATACACCCGATGAGCAGAAATCgacaataaaattgcaatgtAGTATCTGTAAGAAATTCTTTCGAAAGCAATCATTACGAGAGCATCTCCGTCAGCAtacaaatgaaagaattttcaattgtccAATAACATCATGTCCAATGAGCTTCACACGCAAAGCTAATCTTAAAAATCACATTAGAAACATTCACCGAAAGGACACTGAAAATCCAACCTCATCGTCAAcatttgtttgtaaaatttgcggcaaaaaatttctcagcaaatTCTTCTTAGATCAACACAAGTTCATTCATCGCAAGAAAATCGAAACAAAAACATCAGCATGCCAAATATCAAGTTGCATTTATGTAAAGCACAATTCAGTGGATGCAAAAAATCACTTACTTGGTAATAATGATGAGAAATTGTTCATTTGTACACAACCAAATTGCGATTATCAAAGTGAAACAATGGAACAATTGAAAAGtCATTCTCATAAGCATCaggaaattgaatttagaTTCAATTGCGAACACTGTGATTATAAGACAAAACTATCAAGTCATCTTAAACGACATATGAGAATTCACGAAGCCGATCGgggtaaaatttataaatgcaaTTTCTGCGACTACGCTTGCAATAATTCtGAGAATTTACGTAAACATGTTCTGCATAGTAATAAACATCAAGGACGCTTTATGTATGAGTGCATTTACTGTGGTGATGATGAAAACTTGCGATTTAAATGCAATTACATGAGGGAATATCAGAAGCATTTATTGGAAGCTCATAACATTTCAAAGAAATCTTAG
- Protein Sequence
- MELVEDDSHLCIRCKETIIGLQNYVNHRQSNCGAQAKSSSSKQQQFSSNFSFLDSHTNKKMQSYEHFNFGDEREMEEDDDEEEELMEEDEDEESDDSEISGVEQNNKSTESEYKEYDYDFFSSLELQYMSKNRNSPATTAARDSGGKKFNHHRIMTRKATAAAIMAQNGDEWIDDTSVGINKKRDYGKYYQNESNESDSDDSEPATAPPRNYTRGKWKPGSQWKSTTNWDENESDLDKSFDDTNPPPHHTQGKWIPGTKISRLEFKDEKIDEKSERDSFWCRWCSRNLATRAIYERHLKSNLHKKRTRQQNELEGAGEKLNELSTHFDERKKKSLEEEKIIEIESEILDRATATSTPITRTTHDDIDDDGASNNVYNSASEEEQQQQHQKLGIKKSKKFRSRTKITCEECDMKLPVHLFGCHLISHFHYRKMLLNPKKSFDTVLNNFHKIVIQSPFQCHPCKFYFNTREEFTRHWNSIEHTTTVSKLVGGKFLCSSFCKFECVSNAEMTEHLESAEHQQVVTLINRSKPIIIRYITRLFCPHCQQEFRYNIQLMRHSKSCELKKMDKFQFDAGATYGCDVCEKFFQSGLSLQKHKIKAHKVSIFFCSECQLTFNRASEAKAHRRTNQHKMMAIRKRILNDPHIREQMKKKCQFCGLELMDIIELKEHINIKHPERKFSCGRCGMKFAIAQEISRHVRDKLCKFYNTNRAEQSTTCTITSNEGGTEKAPEVEVESAETSTSKQTFALITSDSIKYPSTENDDDKVHVTTVANDEEEESPSQGIEMDNFDLLSSAFQISNVTNNETDVDDDNEFGMIIGEIDNKMDGQIVEILFTCKICEFSTESHAEFLFHEILHDTPDEQKSTIKLQCSICKKFFRKQSLREHLRQHTNERIFNCPITSCPMSFTRKANLKNHIRNIHRKDTENPTSSSTFVCKICGKKFLSKFFLDQHKFIHRKKIETKTSACQISSCIYVKHNSVDAKNHLLGNNDEKLFICTQPNCDYQSETMEQLKSHSHKHQEIEFRFNCEHCDYKTKLSSHLKRHMRIHEADRGKIYKCNFCDYACNNSENLRKHVLHSNKHQGRFMYECIYCGDDENLRFKCNYMREYQKHLLEAHNISKKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249632;
- 90% Identity
- iTF_01249632;
- 80% Identity
- -