Pvan017415.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- grau
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:4977934-4980408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.024 1.1 9.9 2.5 2 23 175 197 174 197 0.96 2 10 0.1 4.8 7.8 0.8 6 23 206 223 206 223 0.99 3 10 0.00042 0.019 15.4 1.5 1 23 228 250 228 250 0.95 4 10 4.8e-05 0.0022 18.3 2.7 1 23 256 279 256 279 0.95 5 10 0.013 0.59 10.7 0.2 1 23 288 313 288 313 0.94 6 10 0.00022 0.01 16.2 1.0 2 23 320 341 319 341 0.97 7 10 0.37 17 6.1 4.6 1 23 352 374 352 374 0.98 8 10 0.0015 0.067 13.7 3.2 3 23 383 404 382 404 0.91 9 10 2.4e-05 0.0011 19.2 6.4 1 23 410 432 410 432 0.96 10 10 0.09 4.1 8.0 7.1 1 23 438 461 438 461 0.98
Sequence Information
- Coding Sequence
- atgacaAGTTGTACTTTATGTTTCAATTCTATAAGTGAAGCTgagtcaattaaaattgacgAATGTTTTCAATCACACGAAAAtggattagaaattttaagattgcatttttcttttgctgataaaattctCACAATTTCTCGCTTGATTTGTCAAATTTGTTGGTCTCAACTTTCATCATTTCACGAATTTTACAATCAAGTtgcattaaattatcaaataacaaCCAAAATTCCAGCAATTTATTCAGAAATTCCAACAGTTGCTCTTGAAGAtgtgaaagtaaaaattgaaaatgattttgatgacAATAATGTGAttgattttcaagattttaatgatgatgatgaaatcaaGGAAGATTTTGGCAcaattgaatcaattaaaGTTGAACCTTTAGAAACTACACCAAAACcatcaaaatcaacaaaaccTAATGAACTACAACCACAAAAACCACAAACAGctcaaatgataaaaaatgcaGCTGATGATAAAAAGATCAAAGAAACAGTCGATGTACGATGTGATATTTGCAAAATGGAATTTGACACTTTTGCACACACAACAAAGCATTTTAGAAAAGTTCACAAAATTAAAGGATATTTGATTTGCTGTGGTAGAAAATATATGAAGAAAAGTCGACTTACGGAACATTTGAATTCACATTTTAATATCACATTTGCTTGTGACATTtgtgataaaacttttttcaccaaaacaattttaaagagGCACAAACTTTTACatcaagaaatgaaattatttCAATGTGATAAATGTCCAAAAAGTTTTGCAACCAAATTCCAAGTTAGAAATCATCTTCATAATGTTCAtctcaatgaaaataaagaactCACTTTCATTTGTCCATTGCCAGATTGTGGAAAAGCTTATGTCAATCAAATTCGTGTTGATCATCATATAAAATACACACATTCTGGTGGTGATCAAATTGTCTGTGAAGTTTGTTCGAGGACTTTTGCAAAACGTTGCTATCTTGATGATCATATGAGAATTCATTTAAGATCTAAAGGATTGAAAAATGATAGATATAAATGTCATATTTGTGAACATTTCATCACTGGTGATCGTGAATTTAGAAGACATGTTAAAAATCATGAGACTGAAGCTTGGGATAATATTTGTCCTTATTGTAGTAGAAGTTGCAAAAGCTTAAAGACATTGAAGAAACATATTTATTTCATGCATCGAATGGAAGCTAAACATCAATGCAAgcaTTGCGgaaaatgctttaaaagaCCACGAGATTTAAGTGACCACGAATCAATTCATACTCAACAAGAAAATTATACTTGTGATTTTTGTCCTCGAACTtttcGATGCCACACAAATATGATGTCACATAGAAGGAAAGAACATCCTGATCTTTATCAACCACCAGTATATATGAGAGAagatgtataa
- Protein Sequence
- MTSCTLCFNSISEAESIKIDECFQSHENGLEILRLHFSFADKILTISRLICQICWSQLSSFHEFYNQVALNYQITTKIPAIYSEIPTVALEDVKVKIENDFDDNNVIDFQDFNDDDEIKEDFGTIESIKVEPLETTPKPSKSTKPNELQPQKPQTAQMIKNAADDKKIKETVDVRCDICKMEFDTFAHTTKHFRKVHKIKGYLICCGRKYMKKSRLTEHLNSHFNITFACDICDKTFFTKTILKRHKLLHQEMKLFQCDKCPKSFATKFQVRNHLHNVHLNENKELTFICPLPDCGKAYVNQIRVDHHIKYTHSGGDQIVCEVCSRTFAKRCYLDDHMRIHLRSKGLKNDRYKCHICEHFITGDREFRRHVKNHETEAWDNICPYCSRSCKSLKTLKKHIYFMHRMEAKHQCKHCGKCFKRPRDLSDHESIHTQQENYTCDFCPRTFRCHTNMMSHRRKEHPDLYQPPVYMREDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249541;
- 90% Identity
- -
- 80% Identity
- -