Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031382.1:11048607-11051208[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.037 1.7 9.2 1.0 2 23 247 271 246 271 0.96

2 9 5e-05 0.0023 18.3 0.5 1 23 304 326 304 326 0.99

3 9 0.0012 0.055 13.9 0.2 2 23 335 356 334 356 0.96

4 9 8.6e-05 0.0039 17.5 0.5 1 23 363 386 363 386 0.97

5 9 0.00087 0.04 14.4 1.2 3 23 396 416 395 416 0.97

6 9 0.0051 0.23 12.0 1.9 2 23 426 447 425 447 0.96

7 9 0.0012 0.057 13.9 1.2 2 23 453 475 452 475 0.96

8 9 0.00018 0.0082 16.5 0.8 1 23 481 506 481 506 0.94

9 9 0.0056 0.26 11.8 2.4 2 23 514 536 513 536 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.037	1.7	9.2	1.0	2	23	247	271	246	271	0.96
2	9	5e-05	0.0023	18.3	0.5	1	23	304	326	304	326	0.99
3	9	0.0012	0.055	13.9	0.2	2	23	335	356	334	356	0.96
4	9	8.6e-05	0.0039	17.5	0.5	1	23	363	386	363	386	0.97
5	9	0.00087	0.04	14.4	1.2	3	23	396	416	395	416	0.97
6	9	0.0051	0.23	12.0	1.9	2	23	426	447	425	447	0.96
7	9	0.0012	0.057	13.9	1.2	2	23	453	475	452	475	0.96
8	9	0.00018	0.0082	16.5	0.8	1	23	481	506	481	506	0.94
9	9	0.0056	0.26	11.8	2.4	2	23	514	536	513	536	0.96

Sequence Information

Coding Sequence: ATGGATGAAGAACTTACAAAATGCAGACTTTGCAATTATCAATCTGATAAAAGATTGATGCTGGATGTTTTTGACCAAAATacagaatattttaataaaattgaaaattatttaagtttaaagattCAACAATCTCAAatctcatcaatttttatttgcttccaCTGTTCACAAACTCTCGataatttccataattttgctacaaaaatcaaagcaattcaaaaaataatttacccAGAAAACGaagaaacaattcaaaatCTACAGTCAGAACCTCTTcatgaacaaatttttgaaattcaagtCATAAATGAATCACAAGATTCTTTTGAAGATTTGGTCAGAGCACcacaaaaaatgttcaaagtTTCAACAATTCGAACAAGAAGCAgcaacaaagaaaaagaaactgaaGTGACAgttgaagaattaaaaaaagacatcgatttgtcaatgaaaattaatgaagtttTAACAAAAGATGATTTAATGAGCGAACAACAGTCGCATAGATCTTTTGATTTTGAAGAGACTGAAgaacattttgaaataatttcaaatgatgaCAATGAAAGCATTgcaaatgaagaagaatttaaaatttttagagatcctgatgatgaagattttcCATCAGCTGAAGcactcaaaaaaattccaacaaaattaattgaaaatggaattttaatttacaaaggtCGAAAACTTATGAaattactttcaattttttacaacacaacttgcaaaatttgtCCAAAAGTTAAAAGATTCAAAACAATTCAAGGACTTTTTGAACATTACAAAACATTGCATACTGAAATTGAACCATTTGTCACTTGCTGCTCAACTGAACTAAAgaaaatgccaaaaattatCTGGCATTTTGTTAAACATATTGAACCAGATGCTTTTAAATGCAGTCAATGTGATTATGTTGTTTCAAGGCCAAAATTCCTTGCCATTCATCAACAAACTCATTTACCTGAAAATCAAAAGCCTTTGGAATGTGatttATGTGACAAACGTTTTATATGGAAAGGAgcattgaaaaatcatttaatgaatCATCAGtcagaaagaaaacttttcacatGTTcaatatgtaataaaaattatcaaacagCAGGATCATTAGCAACTCATAGAAAATCAGCTCATATTGAcacaaacaaaacaagaaaactTTGTGAAATTTGCAGtaaatcattttcaacttttacaTCATATAAAGAACATTTGACATTACACAGTGAAGATAGAGataaaatgcaattgaaaTGTCCTGAATGTGGAAAatggttaaaaaataaaagatgtcTTAAATCACACTTGTTGCTTCACACAAATGATGAACAAAAATGTGAACTTTGTGATtatgtaacaaaaaaagaaaaattgctaaaaaatcACATGGTGACAAAGCACagcaatgataaattttttgtctgcGATCATCCGGATTGTGATAAATCATTCAAAGTTAAACGTGCTTTAACAATTCACAAAGCTAAAGATCATGGTGGAAAAAGTgcagcaaaaaaatgtgaattttgtaGTCGTGAATTTgcaaattcaacaaattattACACACATAGGAAAAATTTGCATGCTAAAGAACTTGAagaagttaatttaaaaaagaaagaggaagaaaaattgaaaagaatcaAAGCTGGGTTAGAAGGAAATATTGAAAGTAGTAATTTATGA
Protein Sequence: MDEELTKCRLCNYQSDKRLMLDVFDQNTEYFNKIENYLSLKIQQSQISSIFICFHCSQTLDNFHNFATKIKAIQKIIYPENEETIQNLQSEPLHEQIFEIQVINESQDSFEDLVRAPQKMFKVSTIRTRSSNKEKETEVTVEELKKDIDLSMKINEVLTKDDLMSEQQSHRSFDFEETEEHFEIISNDDNESIANEEEFKIFRDPDDEDFPSAEALKKIPTKLIENGILIYKGRKLMKLLSIFYNTTCKICPKVKRFKTIQGLFEHYKTLHTEIEPFVTCCSTELKKMPKIIWHFVKHIEPDAFKCSQCDYVVSRPKFLAIHQQTHLPENQKPLECDLCDKRFIWKGALKNHLMNHQSERKLFTCSICNKNYQTAGSLATHRKSAHIDTNKTRKLCEICSKSFSTFTSYKEHLTLHSEDRDKMQLKCPECGKWLKNKRCLKSHLLLHTNDEQKCELCDYVTKKEKLLKNHMVTKHSNDKFFVCDHPDCDKSFKVKRALTIHKAKDHGGKSAAKKCEFCSREFANSTNYYTHRKNLHAKELEEVNLKKKEEEKLKRIKAGLEGNIESSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01249537;
90% Identity: -
80% Identity: -