Pvan005348.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031381.1:29320188-29322392[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00019 0.0087 16.4 4.0 1 23 376 399 376 399 0.97 2 10 0.18 8.2 7.1 0.6 6 23 409 426 407 426 0.97 3 10 0.0022 0.1 13.1 0.4 3 23 435 456 434 456 0.95 4 10 4.4e-05 0.002 18.5 2.1 3 23 466 486 464 486 0.95 5 10 8e-06 0.00037 20.8 0.4 3 23 497 518 495 518 0.96 6 10 5.6e-05 0.0026 18.1 2.8 3 23 526 546 525 546 0.98 7 10 0.00039 0.018 15.5 0.3 2 23 552 574 551 574 0.96 8 10 3.7e-05 0.0017 18.7 5.4 1 23 581 603 581 603 0.94 9 10 0.061 2.8 8.6 0.6 1 23 609 633 609 633 0.98 10 10 0.0032 0.15 12.6 2.2 1 23 639 662 639 662 0.93
Sequence Information
- Coding Sequence
- atgaatattgaagaaaaaaataaacgtaaattaaagtttatgaGTTTTCAGGAAAAACTTAATGCAATTGAATTAGTCGGAAAAGGAAAGAGTCAGCGTAAGATTGCAAAAGAGCTAGGAATAGGGCGAACTACTCTTTATAATGCTCTCAAAAACaaggataaaattttagaagcttcaaaaaaatatGAAGGTACAAATAAACGAAGAATAGCAACAACAAAACAtcctgaaattgaaaaagctgTTTTagattatatatttatttcaagAGAAAATAAAGTGCGAATAACTGGAAGTTCAATTCAATCTATTGCATtagaagcagcagcaaaacTTGGATATCATGATTTTTCTGGCAGTAATGGTTGGTTATTCAGTTTTTTCAAACGCAATAATATAAGCATAAAAGAGTTAAATGAGGGAATAGAGAATGAGAACAAGAAGCTACAAGAAATAGAAGATAATTCTGTAACTGAAATTTTATGCACTGCTATAAATGATGATGTAAGAGAAGaggaagaaattatttatacaGAAGCTCTTGAAACAGAGGAAGATACAACAATATTAGATTGGCGTTCATGGTGTAGAATTTGTGGAAATATTGTAACTTTAACTACAATTCAAGATGGTATTCTGGAAATAATTGTAAAGATGGTAAATATCTCATTTGATGAAAACGTAAAAATTTGCAGTGAAtgctataataaatttcaaactatGGCCGAAATGATCAACAAGAGCAAGATAATCGAAAATATGTTTATTGAATTGGATGAGTATGAAAAATCTAATTATATCACAGAAGAAGTTGTTAATGCAATACGTGATCgttatgatattaaaaattttactaaagaACAATTAAATGAACTCATAGAAATTAACTATACAAAATCAgatgatcaaattatttataatgaagaagaagaactcGAGATGGtttatgaagaagaaaataaaagtgataGTCAAATTATTGAATGGGAAAATGATGAATCACATGTTGAAATAGAAGAATTGGAAGAAGAAACGATTGAAAATTGTAGTGATTTTGCTGAAAGAGAAGATAATTCTTATAAGAACAGTTTTTCAAGAGAAAATGTTGAAGATATGTATGATTATAAATGTCACGTTTGTTCTGAAGTCTTCTCCCGTATGTATTTCCTCACAAATCATACAAGACAACAGCATGATTGCCTTCCACGAGTAGCATGTTCATGTGGACGCTTCTTATCTATTTGGGAATCTTTAATGGCTCACAGAAGAAAGCATTCCACAGAACCTCGAAATTGGCTTTGTGATCTCTGCAATGCAAGTTTTATTACTAAGAATGGGTTAacaattcatataaaattcaaacatcAAACGCAACATCAACCCCTTCATCTCTGCACAACTTGTggtaaagaatttaaagatgCTTATACATTGAAGACTcatgagaaaattcatttaccAGACAACGAACGATTCATTTATGGATGTGAAACTTGTGGGAAGAAGTTTACACAACGTGGAAGTCTTAAAATTCACATCAGTTCAGTTCATAATggtcaaaaatcaattttatgttatttatgTTCCAAGaGTTTTTCAAGTAatcattatttgaaaattcacatTCAAACTCATTCGATTGAAAATGTTCCCTGTGATATTTGTGATTCCATCTTCAAAAATCGTGTAAGTCTACAaaatcataagaaaaaaattcacaataccagagaacttaattttaaatgcacCGAATGTGATAAACGATTTCATAACCGTAATCATTTGGAGAGACATATGCCTACACATacacaagaaaagaaattcaaatgcaCGTATGAAAATTGTGAACAAGCTTATAAATGGGAGAAAGATTTGCGAAATCACATGGCACGGCataaaggagagaaaaatcataaatgtaTATGGTGTGATCGAACATTTGTTGACTCTGGAAATATGAGGaaacataaattaaagaatcatccAAATGAGCTCGcagaatttgaagaaaaatatggaaaacGTCGTCgcttaaaagatttattattagttaatgatgatgatcaacATGAAACTCAggacaattaa
- Protein Sequence
- MNIEEKNKRKLKFMSFQEKLNAIELVGKGKSQRKIAKELGIGRTTLYNALKNKDKILEASKKYEGTNKRRIATTKHPEIEKAVLDYIFISRENKVRITGSSIQSIALEAAAKLGYHDFSGSNGWLFSFFKRNNISIKELNEGIENENKKLQEIEDNSVTEILCTAINDDVREEEEIIYTEALETEEDTTILDWRSWCRICGNIVTLTTIQDGILEIIVKMVNISFDENVKICSECYNKFQTMAEMINKSKIIENMFIELDEYEKSNYITEEVVNAIRDRYDIKNFTKEQLNELIEINYTKSDDQIIYNEEEELEMVYEEENKSDSQIIEWENDESHVEIEELEEETIENCSDFAEREDNSYKNSFSRENVEDMYDYKCHVCSEVFSRMYFLTNHTRQQHDCLPRVACSCGRFLSIWESLMAHRRKHSTEPRNWLCDLCNASFITKNGLTIHIKFKHQTQHQPLHLCTTCGKEFKDAYTLKTHEKIHLPDNERFIYGCETCGKKFTQRGSLKIHISSVHNGQKSILCYLCSKSFSSNHYLKIHIQTHSIENVPCDICDSIFKNRVSLQNHKKKIHNTRELNFKCTECDKRFHNRNHLERHMPTHTQEKKFKCTYENCEQAYKWEKDLRNHMARHKGEKNHKCIWCDRTFVDSGNMRKHKLKNHPNELAEFEEKYGKRRRLKDLLLVNDDDQHETQDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -