Pvan009359.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polypedilum vanderplanki
Gene Symbol
-
Assembly
GCA_018290095.1
Location
CM031379.1:13733797-13736116[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.9 1.8e+02 2.9 0.3 1 23 177 200 177 200 0.85
2 16 0.0072 0.33 11.5 2.8 2 23 212 234 211 234 0.96
3 16 3.1e-05 0.0014 18.9 2.9 1 23 257 280 257 280 0.95
4 16 0.15 6.8 7.3 0.3 3 23 289 316 287 316 0.84
5 16 0.073 3.3 8.3 0.6 2 23 329 351 328 351 0.88
6 16 0.00012 0.0056 17.1 0.8 2 23 365 387 364 387 0.90
7 16 0.0043 0.2 12.2 2.9 1 23 394 417 394 417 0.97
8 16 0.0038 0.17 12.4 0.6 2 23 423 444 423 444 0.97
9 16 2.2 1e+02 3.6 0.5 1 20 457 476 457 479 0.94
10 16 0.074 3.4 8.3 3.8 1 23 518 540 518 540 0.97
11 16 9.5e-06 0.00044 20.5 1.3 3 23 579 600 577 600 0.94
12 16 4.9e-06 0.00023 21.4 1.1 1 23 606 628 606 628 0.98
13 16 0.48 22 5.7 2.6 1 23 634 658 634 658 0.93
14 16 0.14 6.6 7.4 5.3 1 23 667 691 667 691 0.94
15 16 8.1e-06 0.00037 20.8 0.9 1 23 697 721 697 721 0.98
16 16 0.0014 0.065 13.7 0.5 1 23 728 750 728 750 0.94

Sequence Information

Coding Sequence
ATGTTAGTAAGTGATATGATTGAGGAAGTGGTACCTGAACTTccgaaaatttcaaaattcgaTGAACTAAGCAAAAGTGTATGTGCAAAATGTATGGATATAGtcaaaaatgcattaaaactTAAAAGATATAGCATAGAAAATGATACTGCACAAAGATCTATGCTTATTGATCGAAAACCCATAATTGAGAATATTAAACTTGAGCCACAAGAAGAGGAAGTTGCAGTCATAGAGAGCATTGCAATAAATTGTAATGCATTCTGGAGTGAAGAAGAGGATGAAAGATATGATTATGATGACGAAGATGATGAATATAGTAGtagtaataataaatattcacTCAAGCCTCTCTCAGTGAACATTAGAAAACTTTCATCAAATGATTACATTTCTCGTCAAGAGGTGACATTAAAGTGTGACGTGTGTGCACAAAAAGGTATTAATAAAGAATTCAAAGCTAgatttaaaatagaagaaCATATGCTTTCACAACATCTTGGTAAAAATACAACTAAAAGGAAAGTTTACGATTGTGATAAATGCTTAACTTCTTTTTTGGTGTATAATGATCTTAAATTACATGCTCTATATGTACATGGAAAAGTGAATGTAAAAACTTCGAAACCTTGGAAATGTTCTCAATGTGATAGAATTTTCCATTCAAGAAAAGCAATGCGTGAACATCGTAAAAGTGAGCATGCTTTATCAACTCACCGTagtaaaaagataaagaaagagCTAAAATATGATTATTCTAATGAAACATTTCTGTGTCATGTTTGCAATAAAACATTTGCACGTCGTGATTCGATGCTCTCTCATATTCGAAAAAcacatgaaatttttgctgGAAATATGCGTTGTGACATGTGCTTTAATAAAGATGgaacaattaaaatatttagaattaAAGCTATGCTCGAAAAACATATGATGACTGAGCATTTAGGAATAGAGCAATTGAAAGATACTGGTTATTTACAATGTGATGAATGCAAGACAACCTATACTCTATTTCAAGATCTTCAAAGTCATGCATTTTATGTACATAATAGAGTGATATCAGAAAAACCAGAACAGCCAAGAAAACGATGTCCTTTCTGTGGTGAAACTTTTGCCACAAAACATCAATTAAGTGTTCATTATGACGACATACATccagatgaaagaaaaagattctCTTGTGATCAATGCTCTGAGACATTTATGAGAGAGCATAAACTTGAAACTCACAAAAATCGTGTTCATGGAGATAATATACGTAAATGTTCAATTTGCGATCTTAACTTTCCAAATAAGCAAGATTTTATTCTACACAAATATATGCATTGCGATTATCTTGCTGAAAATAGAGATCCTGTAAAATTCGAATGTGTGCTTTGCTCTTTTAACACATATGATCAGGAAGAGCTCTACAGTCATTTACCTTATCATATCAGAGAATTTGATCAAACTGAGAAAGTCATAGTTTGCATAAAttgtacaaaaattattgattgttACGAAACATTGCATTCTCATACTGGAGATCATAATGAAAATGTGACACATGTTTGTCTAAAATGtaataagaaatttgttatgggaactaaatttttaaagcatttgatgaaacatgatgatgatttactgttcaaatgtaaatttgaaaactgCAGATTTAAGACAAGTGAAAAATATCTATTGGATGCTCATACTAAACATAAACACGAAAATATTGTATTCCATCTATGTCAGATTTGTGGACAGTCATTCAGTACAAGAGGATCTTTAAAATCTCACATCTCAAGTTTGCATGAAGACAACAAGACATTCAAGTGTAATTTGTGCCCTATGACATTCCGTGTTGCAAGTCATTTGAGAAATCATCAAGCTGTTCATTCTAATGAATATACATTCAAATGTGATCATCCGGGATgtattaagatttttaaagcaaagagaaatttattgagaCATAAAACTTTCCATGATCCAAGCAAGTTGAACTATAAGCATCACTGCACTTATGAAAATTGTacgaaaaaattcttaaaacgAGATGCTCTCAACAGACATATGTTGTCACATACAAAAGTTAAGCCTTACGAATGCAATTGGGAGGGTTGTGATAGAGCATTCAGTCAATCGAACGATCTTCATAAACATCTTAGACAACATTATGGTCACGATCGAATTCATGCATGCAAATTATGTAATGAGAGTTTCCGTTTGAAAGCTGAATTGAGACTACATGAAGCCATACATTATGTTAACTAA
Protein Sequence
MLVSDMIEEVVPELPKISKFDELSKSVCAKCMDIVKNALKLKRYSIENDTAQRSMLIDRKPIIENIKLEPQEEEVAVIESIAINCNAFWSEEEDERYDYDDEDDEYSSSNNKYSLKPLSVNIRKLSSNDYISRQEVTLKCDVCAQKGINKEFKARFKIEEHMLSQHLGKNTTKRKVYDCDKCLTSFLVYNDLKLHALYVHGKVNVKTSKPWKCSQCDRIFHSRKAMREHRKSEHALSTHRSKKIKKELKYDYSNETFLCHVCNKTFARRDSMLSHIRKTHEIFAGNMRCDMCFNKDGTIKIFRIKAMLEKHMMTEHLGIEQLKDTGYLQCDECKTTYTLFQDLQSHAFYVHNRVISEKPEQPRKRCPFCGETFATKHQLSVHYDDIHPDERKRFSCDQCSETFMREHKLETHKNRVHGDNIRKCSICDLNFPNKQDFILHKYMHCDYLAENRDPVKFECVLCSFNTYDQEELYSHLPYHIREFDQTEKVIVCINCTKIIDCYETLHSHTGDHNENVTHVCLKCNKKFVMGTKFLKHLMKHDDDLLFKCKFENCRFKTSEKYLLDAHTKHKHENIVFHLCQICGQSFSTRGSLKSHISSLHEDNKTFKCNLCPMTFRVASHLRNHQAVHSNEYTFKCDHPGCIKIFKAKRNLLRHKTFHDPSKLNYKHHCTYENCTKKFLKRDALNRHMLSHTKVKPYECNWEGCDRAFSQSNDLHKHLRQHYGHDRIHACKLCNESFRLKAELRLHEAIHYVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01249419;
90% Identity
iTF_01249419;
80% Identity
-