Pvan009264.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031379.1:5941511-5943006[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.4e-05 0.0025 18.2 4.3 1 23 169 191 169 191 0.98 2 10 2.4e-06 0.00011 22.4 2.8 2 23 198 220 197 220 0.96 3 10 0.00063 0.029 14.8 2.2 3 23 227 247 226 247 0.98 4 10 0.00015 0.0068 16.8 7.2 1 23 253 276 253 276 0.95 5 10 4.4e-06 0.0002 21.6 4.3 1 23 282 304 282 304 0.98 6 10 0.00022 0.01 16.2 3.0 1 23 323 345 323 345 0.99 7 10 7.9e-05 0.0036 17.6 6.9 1 23 359 382 359 382 0.97 8 10 0.00014 0.0065 16.8 0.2 1 23 388 412 388 412 0.98 9 10 0.14 6.6 7.4 2.1 1 23 418 442 418 442 0.96 10 10 0.028 1.3 9.6 3.8 1 23 448 471 448 472 0.94
Sequence Information
- Coding Sequence
- atgatgaatatttcTGAAAGAATACAAgacaaaattagaaataaaagtatttgTTTCGTATGCTTAGATGAGAATGATGTTATAAAACAAGATAGTTTCATTGATGAATTCaagaatttcttgaattttgaGATTAAGAACTATATTATAGGGCATGAATGCTACAAAATAATCTCttcatttaatgatttaaaagagACTGCACTGAAATCATATAAATgcatattaaaaataacagatgaaaattctcattatAGAAAAGAGGAGGAAGAGAGTGATGAAGCACCTGAAGTTTGTGAAGAGTATAATTACGAATCATTTTTAAGCCCTATAGAAGTCAAATCTGATTACTCTGATAAAACCATTGAACAGGAAtcaaagttaaaaattcatgtcACACGATGTAATACTAAAGAGAGACAAACTAGAAAGCAAAGaggaagaaatgaaaagaggATTAAAGAGAATGTTGCAACCAACGAACAAAAAATTCGAGTTACTGAATATCACTGCGACATTTGTCAGAAAACATTTTCTCAATTGAGTAGTAAAAATTCTCACCAACAAACCCACAACGCTCAGGATACTTTAAAATGTCCTGAATGtcaaaaaacatttaagagctctctctatttaaaaaaacatcaaagaaACAGacatgagaaaattgaaaacatctGTAGTACGTGTAACAAAGTTTTTGATTCACTaccaaattttcattatcatctaAAAACTCACGAAAATGAGAAACAATTTAAATGCAGACACtgttcaaaaagttttattcaacaacatcatttgaaaaatcatgaGATTTCAATTCATATTGAttcaaaatcattcatttGTTCTCAGTGTGgtaaaacttttaagaaaagaaatagtTTCAAAACTCACATGCAAAAGCAtgacatagaaaaaatttcaccaaaaatAGAAACAATCCCAATAGAGCAAAAGACTTATACTtgtgaattttgtaaaagaaactttaaattgcTTTCTTCACTTTCTAAACATCTTACAACTCAtcaaaactcaaaattttcatcatcatcatcgataaGGAAACACAAGTGTGCTCATTGTTCACAATGCTTTAAAAGAGCagaacatttgaaaattcatatcaACAGAATACATCTCAAAATGAAACCTTATACATGCACATTTGATGGAtgtgataaaagtttttctcaaaTAGGTGATAGAAATGTTCATATGTTGATTCATACgcaagagaaaaagtttcaatgcAAATACGAGAGttgtaaaaaatcttttcgcTTAGAAAAGGCAAGAAatcaacatgaaaaaattcacataggtttgaaaacatttctttgcgaaatttgtaaactttattttatgactTATGCCAGTCTTCAACATCATACACAAAAAGTTCATCATACTTCAACggatgaaaattga
- Protein Sequence
- MMNISERIQDKIRNKSICFVCLDENDVIKQDSFIDEFKNFLNFEIKNYIIGHECYKIISSFNDLKETALKSYKCILKITDENSHYRKEEEESDEAPEVCEEYNYESFLSPIEVKSDYSDKTIEQESKLKIHVTRCNTKERQTRKQRGRNEKRIKENVATNEQKIRVTEYHCDICQKTFSQLSSKNSHQQTHNAQDTLKCPECQKTFKSSLYLKKHQRNRHEKIENICSTCNKVFDSLPNFHYHLKTHENEKQFKCRHCSKSFIQQHHLKNHEISIHIDSKSFICSQCGKTFKKRNSFKTHMQKHDIEKISPKIETIPIEQKTYTCEFCKRNFKLLSSLSKHLTTHQNSKFSSSSSIRKHKCAHCSQCFKRAEHLKIHINRIHLKMKPYTCTFDGCDKSFSQIGDRNVHMLIHTQEKKFQCKYESCKKSFRLEKARNQHEKIHIGLKTFLCEICKLYFMTYASLQHHTQKVHHTSTDEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -