Pvan014715.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:5523789-5525189[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.5e-05 0.0011 19.2 0.9 1 23 63 85 63 85 0.97 2 14 0.14 6.6 7.4 6.0 3 19 94 110 93 113 0.93 3 14 0.0027 0.12 12.8 0.4 2 23 115 137 114 137 0.92 4 14 0.0077 0.35 11.4 1.5 2 23 147 169 146 169 0.96 5 14 0.061 2.8 8.6 0.2 7 23 183 199 177 199 0.88 6 14 0.84 39 5.0 0.5 2 10 204 212 203 223 0.74 7 14 5.7e-06 0.00026 21.2 2.2 2 23 231 252 230 252 0.97 8 14 0.00033 0.015 15.7 3.9 1 23 256 279 256 279 0.95 9 14 9.8e-06 0.00045 20.5 0.5 3 23 287 307 285 307 0.98 10 14 0.0011 0.053 14.0 2.7 1 23 315 337 315 337 0.99 11 14 0.0011 0.049 14.1 2.2 2 23 346 367 345 367 0.97 12 14 0.00053 0.024 15.0 0.1 2 23 375 396 374 396 0.96 13 14 0.025 1.1 9.8 2.0 2 23 405 426 404 426 0.97 14 14 0.00011 0.0053 17.1 1.2 1 23 434 456 434 456 0.99
Sequence Information
- Coding Sequence
- atgattaaaaaatttgatgaaacttccgaaattttcaacattaaaattgaaccaataaatttaaatttagtaaaaaaagaaatcaaaagtgaaaatgaaaatgaaaaattcttttctatttttaaaccTAAAGTGgaaggaaattttatgaaaaataatttttctgtagTTCTAAATGGGAATAAATTTGAGTGCAAtatttgtaaaagaaaatttccaagAAGAGATCGACTTCAATATCACATGGGAATTCATTTGCGTGAAAAATTTGAAGGAAATTGCcgaaattgtcataaaaaatttactaatcaAAAACGTTTAGAAAATCACAATTGCAATTCagtttgtaaattttgcaataaaaaattatcatcaaaagCTGCACTTTATCAGcatataatttttgttcataCAAAACAGCATCAAATTAAGCTCATTGAATGTGATTTTTGTGGTCTTAAATGTCAAAGAAAGGAAACAATGATTGAACATATGAAAGTAAAACATGCATGTggaaaaactcaaaaatttcaatgtgattttgatggaaaaatttttgattcaaaagtAAAACTTTATCAACATATGAAAGTTCATAATAAGAgccaaaaatgtaaaatttgtggaaaaattgtaaaacttttgtatcaacatataaaatttgttcattcaaaaattgattcaaaaattcagTGCAATATTTGCCAAAAAATGTTTAGAACTAAAACCCATTTGGACATTCATCttaaaattcataacaaaaattttcaatgcacaatttgctttaaaaaatttatatatatgagCAAACTAAAGTCCCATATGGAACATGaacatgaaaaacaaaaatattatggttgtgaaatttgtcaaaaagtttttaaatctaTGGCGTATTTAAGATCTCATATGACAACTCATAACAATAACAGACCAAAACCTTTTAAATGTCACATttgtgaaaattcattttttacaaaaggaattcttgaaaatcatttaaaaaccCATGACAAAAAtcgtattaaaaatttaaaatgtagtTATTGCAATTATGCAACagatatgaaaaaaagttttgagcgACATATGAAACAGCATAATGCAAATATAGTAAAAATTCCTTGTCCTTTATGCAGTTATTCAGCAACTGAAAGAAGCAGTTTAAAGAAACACATGATATTGCATgatgagaaaagagaaaaaaaattaaaatgcacaATTTGTGATTTTGCAACCGACAACAAACATGTTCAAAAAATGCATATTCGAACTCAtgataaaaatagagaaaaactGTTCAAATGTCAACTTTGTAAATATTCAACTGATGCCAAAGCTAGTTTACAAAGACACATGAAAGTTCATGGTCAAAATTTGGAAggcagaaaaattaaatga
- Protein Sequence
- MIKKFDETSEIFNIKIEPINLNLVKKEIKSENENEKFFSIFKPKVEGNFMKNNFSVVLNGNKFECNICKRKFPRRDRLQYHMGIHLREKFEGNCRNCHKKFTNQKRLENHNCNSVCKFCNKKLSSKAALYQHIIFVHTKQHQIKLIECDFCGLKCQRKETMIEHMKVKHACGKTQKFQCDFDGKIFDSKVKLYQHMKVHNKSQKCKICGKIVKLLYQHIKFVHSKIDSKIQCNICQKMFRTKTHLDIHLKIHNKNFQCTICFKKFIYMSKLKSHMEHEHEKQKYYGCEICQKVFKSMAYLRSHMTTHNNNRPKPFKCHICENSFFTKGILENHLKTHDKNRIKNLKCSYCNYATDMKKSFERHMKQHNANIVKIPCPLCSYSATERSSLKKHMILHDEKREKKLKCTICDFATDNKHVQKMHIRTHDKNREKLFKCQLCKYSTDAKASLQRHMKVHGQNLEGRKIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -