Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031381.1:13241641-13243419[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6e-07 2.7e-05 24.3 3.0 1 23 74 96 74 96 0.98

2 14 0.00043 0.02 15.3 3.4 1 23 101 123 101 123 0.98

3 14 0.00015 0.0068 16.8 0.7 1 23 127 150 127 150 0.92

4 14 6.2 2.9e+02 2.2 0.2 2 12 157 167 156 179 0.81

5 14 0.032 1.5 9.5 0.8 3 23 192 214 190 215 0.84

6 14 1e-06 4.8e-05 23.6 5.9 1 23 221 243 221 243 0.97

7 14 2.5e-05 0.0011 19.2 0.8 1 22 250 271 250 271 0.95

8 14 0.00021 0.0095 16.3 0.6 1 23 354 377 354 377 0.96

9 14 6e-06 0.00028 21.2 0.8 1 23 397 420 397 420 0.97

10 14 0.12 5.4 7.7 0.4 2 23 428 449 427 449 0.93

11 14 0.038 1.7 9.2 0.4 1 23 458 481 458 481 0.95

12 14 0.00025 0.012 16.1 0.2 1 23 490 512 490 512 0.95

13 14 3.8e-06 0.00017 21.8 2.0 1 23 518 540 518 540 0.98

14 14 1.9e-05 0.00088 19.6 2.7 2 23 548 569 547 569 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6e-07	2.7e-05	24.3	3.0	1	23	74	96	74	96	0.98
2	14	0.00043	0.02	15.3	3.4	1	23	101	123	101	123	0.98
3	14	0.00015	0.0068	16.8	0.7	1	23	127	150	127	150	0.92
4	14	6.2	2.9e+02	2.2	0.2	2	12	157	167	156	179	0.81
5	14	0.032	1.5	9.5	0.8	3	23	192	214	190	215	0.84
6	14	1e-06	4.8e-05	23.6	5.9	1	23	221	243	221	243	0.97
7	14	2.5e-05	0.0011	19.2	0.8	1	22	250	271	250	271	0.95
8	14	0.00021	0.0095	16.3	0.6	1	23	354	377	354	377	0.96
9	14	6e-06	0.00028	21.2	0.8	1	23	397	420	397	420	0.97
10	14	0.12	5.4	7.7	0.4	2	23	428	449	427	449	0.93
11	14	0.038	1.7	9.2	0.4	1	23	458	481	458	481	0.95
12	14	0.00025	0.012	16.1	0.2	1	23	490	512	490	512	0.95
13	14	3.8e-06	0.00017	21.8	2.0	1	23	518	540	518	540	0.98
14	14	1.9e-05	0.00088	19.6	2.7	2	23	548	569	547	569	0.98

Sequence Information

Coding Sequence: ATGTctcaatttaattcattacTGATCTTGGATGTTGATGAAAACGCCGGCAATGAATACAATCAGGTATCAAATGATGAAGATAATGTAATATATTATATGTTAGATGCTGAAGgtataaaatattatgaatcaatcaattttgtaCAAGAATCTTCCCATCAAAGTGCATCAActtcaattttacaaaacgattcaatttatatatatccaaataaatatatatgtgATCACTGTGGAAAGACTTTTTCACAAAAGAATAATATTCGTCTTCACATGAAtcgtcataaattttttgaattcgaATGTCATGCTTGTGGTAAAAAGTATAAAACTATTCAATCATTACGTTATCATTTACGTCAACATTTCGAAATTTATTCATGTGAAATTTGTGGTCAAGAATTCAAGCACAAGAAATTATTCATTGCTCATAATGCTTCAGCTCATAACCAAGAACTTTTaatcaaatgcaatttttgtgCTAGAAAATTCGCTAGAATTGATATTCGTGATGCACATGAACGATCTGTGCACCATGTTAACGGAAATTATCATTCTGCTCAATATAACTGTAAGGAGAAGCCATGTCAAGAATCTTTCATCTATCGTAATGAATTAGTCAATCACATGATTTTACATCATTACACAGGAAATATTCACTCTTGTCATgaATGTGGaaagaatttcaagaaaaaatcgCTTTTAACACAACATATGAAAATTCATGAGAAGAAtacaatgaaatatttttgcgaTATTTGTCAGCAATCGTTTACATATAAATCAGGATTGATTAAACACTTAAAAAGAAACAgatgtaataaaattcttaaaatcagatcattaaacaatttttctaaacatcAAATGAAGGAAATTGCGAAGAAGCAACTCTTGGAAATAACTGTGTCTAATAGTTCAGTTgttaagaatttaaaacttcaatcatcaattgaaaatgattttgaaaaaaataacaggATAGCGCGAGAGAGTAATATGAACTTGGGTTGTTTTAATGAAGCGGTTGAACATTACAATGAtgtaaagtttaattttatttgtgacaTTTGCAATGCTAACTACAAAACCAAAGTTTTACTCTCTAAACATATCAAAAATACTCATTTATTGGAAATGAATTCTGAAAAACATctcaaaattcataaaataacaaaagctCTTTATAAATGTCCTGAATGTGATAAAGTATTCAAAAGAGAATTTGACGTCGTTAGTCATCAGAAAAATACTCATAgtagtattaaaatttacgtCAAATGCGAACAGTGCGGAAAAACTATCCTTGAAAGAAGTTTAAAAAGCCATATGATCAATCAACATTCTGAAAAGGCAAATTATAAACCATTTATTTGTGAATATTGTGGAAAACGAGAAAggtatgagaaaaatattctaagACATGTTAATAGCGTTCATATACCACAAAATCGAGGTATAACATACAAGTGTCCTGATTGTccggaaattttttttcgtgttCGGGATTTAAGAGCACATTCATTTGTTCATTTTACTGGAAAAATATATTCATGCGATCTTTGCAACAaacaatttaagaaaaattacgATCTACGAACACACATGAATgctcataaaaattcacaagttCCTAAACAATGTCCAAAATGTAATCGATTTTTCCAAACTAAATCGGGTTTGTACAGACATTTACGGAATCATGACTGA
Protein Sequence: MSQFNSLLILDVDENAGNEYNQVSNDEDNVIYYMLDAEGIKYYESINFVQESSHQSASTSILQNDSIYIYPNKYICDHCGKTFSQKNNIRLHMNRHKFFEFECHACGKKYKTIQSLRYHLRQHFEIYSCEICGQEFKHKKLFIAHNASAHNQELLIKCNFCARKFARIDIRDAHERSVHHVNGNYHSAQYNCKEKPCQESFIYRNELVNHMILHHYTGNIHSCHECGKNFKKKSLLTQHMKIHEKNTMKYFCDICQQSFTYKSGLIKHLKRNRCNKILKIRSLNNFSKHQMKEIAKKQLLEITVSNSSVVKNLKLQSSIENDFEKNNRIARESNMNLGCFNEAVEHYNDVKFNFICDICNANYKTKVLLSKHIKNTHLLEMNSEKHLKIHKITKALYKCPECDKVFKREFDVVSHQKNTHSSIKIYVKCEQCGKTILERSLKSHMINQHSEKANYKPFICEYCGKRERYEKNILRHVNSVHIPQNRGITYKCPDCPEIFFRVRDLRAHSFVHFTGKIYSCDLCNKQFKKNYDLRTHMNAHKNSQVPKQCPKCNRFFQTKSGLYRHLRNHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -