Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031381.1:414867-416628[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0055 0.25 11.9 0.1 2 23 161 183 160 183 0.92

2 14 0.00017 0.0079 16.6 0.7 1 23 189 211 189 211 0.99

3 14 0.00048 0.022 15.2 1.7 1 23 217 239 217 239 0.96

4 14 2.5e-05 0.0011 19.2 0.8 3 23 246 266 244 266 0.98

5 14 0.00024 0.011 16.2 2.0 1 23 273 297 273 297 0.96

6 14 0.00024 0.011 16.1 0.7 1 23 302 324 302 324 0.96

7 14 0.0025 0.12 12.9 4.2 1 23 332 354 332 354 0.98

8 14 1.2e-05 0.00055 20.2 3.5 2 23 361 382 360 382 0.97

9 14 0.0033 0.15 12.6 4.0 1 23 388 412 388 412 0.96

10 14 0.00055 0.025 15.0 0.6 1 23 420 442 420 442 0.95

11 14 0.0014 0.062 13.8 2.4 1 23 448 473 448 473 0.94

12 14 7.1e-05 0.0033 17.8 0.2 1 23 480 503 480 503 0.98

13 14 6.1e-06 0.00028 21.2 1.6 1 23 509 531 509 531 0.99

14 14 0.0035 0.16 12.5 1.3 1 23 536 559 536 559 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0055	0.25	11.9	0.1	2	23	161	183	160	183	0.92
2	14	0.00017	0.0079	16.6	0.7	1	23	189	211	189	211	0.99
3	14	0.00048	0.022	15.2	1.7	1	23	217	239	217	239	0.96
4	14	2.5e-05	0.0011	19.2	0.8	3	23	246	266	244	266	0.98
5	14	0.00024	0.011	16.2	2.0	1	23	273	297	273	297	0.96
6	14	0.00024	0.011	16.1	0.7	1	23	302	324	302	324	0.96
7	14	0.0025	0.12	12.9	4.2	1	23	332	354	332	354	0.98
8	14	1.2e-05	0.00055	20.2	3.5	2	23	361	382	360	382	0.97
9	14	0.0033	0.15	12.6	4.0	1	23	388	412	388	412	0.96
10	14	0.00055	0.025	15.0	0.6	1	23	420	442	420	442	0.95
11	14	0.0014	0.062	13.8	2.4	1	23	448	473	448	473	0.94
12	14	7.1e-05	0.0033	17.8	0.2	1	23	480	503	480	503	0.98
13	14	6.1e-06	0.00028	21.2	1.6	1	23	509	531	509	531	0.99
14	14	0.0035	0.16	12.5	1.3	1	23	536	559	536	559	0.96

Sequence Information

Coding Sequence: atgaatattttgaattgttgtCGTGTTTGTTTAGAAGAAACAGCTTTTACAGCATTTAATTTATGTGAATATATTGGAAATGCaacaattaaaagtttaattcaaGAAATATGTCGAAATATTGATcttGACTTCAAACCAGACCTAATTTGTGGAGACtgtttaaatgaattgaaaacaGCATGCAgtttcaaacaaaaatgtgaaacatcaaatcaatttatcaaaaacattaatttccaaacaaaatttcaaattttcgataatgatgacaatgattttattgatacaaatttatttgatgaagattatttcatgaatgaaaatgaattaaaacctgattttgaagaattgttggaaaatcatgcaaaaataaaaacagaaagtGGGAGCAGTTTTGATAGTAAAGGAGTTCAAGTTGAAAGCAAACAATtgattgaaaagaagaaaactaataaaaattcaaaaagatcaAACATAAAATGTCCAAATTGTGATGAAGATTTCACTGGACCAGCAAAATTAATCCTTCACTCAAAAGAATTTCACAATGATTTAAAGccattcaaatgtaaacaatgtgCACGATCATATATGAATCCAAAAGCATTAAAAGTTCATGCAAGAAGTCACGATgaagataaaaagtttaaatgcaCTGATTGCAATGCCAGTTTTCATGTGAAATCAAGtttaatttctcattcaaGCATTCATTCGGGTCAAAAATTTGGATGTGAAATTTGTACTAAGACTTTTAGTTCATTAAGCTACATGCGACAACATCAAGCAACTCATACGAAAActggtgaaaattttatttgtacatTCAATGATTGCCATAAAAAGTTTCCAAATCAATTAGCATTGAGATCACATTTGAAAGTTCATtcggaaagaaaatttatttgtaaaatttgtccAAGTGCATTTAAAACACagcaaagtttaaaaattcattcacttAAACATTCGTCAGGTGATTCAAAGTTATTTCAGTGTCATATATGTGGGTTTGCAACGAAATACCGACAACATTTTCAAGACCATGTTATTTCACATAGCGCTAAAAGAGATCTCGAATGTTTTCATTGcggaaaaaagtttaagaaaaagaCGCTTTTAGTACTTCATATGCAGACTCATTTAAGTCAAAGAAACTTTATctgtaaatttgaaaactgtcaaaaatcttttaagaCTTATAATTCTTATTACGCTCACAAAAGGAAGcatgaaataagaaattcaaCAAAGTTTAATTGTGCAAGCTGTGATAAAGTTTTCTCATCTCATTCAGTTTTGATGGCACATCGAGTTATACATACAGGAGAAAAAACTTATCTCTGTCACTATCAAGGATGCACAAAAGCTTATGcccataaacaaaatttaaatatgcatCTATTAACTGCACATATTGAAAATGCTGTTACATATAAATGTGATTTATGTCcgaaaattttagcaaattcaaatcaacttcgagttcatttaaataaaattcataaagcagagaaaaattttaaatgtaacaATTGCGAAATGAGTTTTACTTCTaatcaacttttaaaaattcatcaaaaagttcatcaaccaaaaagttttaattgtgAATTTTGTAATTATAGTTCTAACTATGAAAATGATCTCAAAAAACATTTGTTAAAAGCtcatgaagaaaataaagaaggttga
Protein Sequence: MNILNCCRVCLEETAFTAFNLCEYIGNATIKSLIQEICRNIDLDFKPDLICGDCLNELKTACSFKQKCETSNQFIKNINFQTKFQIFDNDDNDFIDTNLFDEDYFMNENELKPDFEELLENHAKIKTESGSSFDSKGVQVESKQLIEKKKTNKNSKRSNIKCPNCDEDFTGPAKLILHSKEFHNDLKPFKCKQCARSYMNPKALKVHARSHDEDKKFKCTDCNASFHVKSSLISHSSIHSGQKFGCEICTKTFSSLSYMRQHQATHTKTGENFICTFNDCHKKFPNQLALRSHLKVHSERKFICKICPSAFKTQQSLKIHSLKHSSGDSKLFQCHICGFATKYRQHFQDHVISHSAKRDLECFHCGKKFKKKTLLVLHMQTHLSQRNFICKFENCQKSFKTYNSYYAHKRKHEIRNSTKFNCASCDKVFSSHSVLMAHRVIHTGEKTYLCHYQGCTKAYAHKQNLNMHLLTAHIENAVTYKCDLCPKILANSNQLRVHLNKIHKAEKNFKCNNCEMSFTSNQLLKIHQKVHQPKSFNCEFCNYSSNYENDLKKHLLKAHEENKEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01249352;
90% Identity: iTF_01249352;
80% Identity: -