Pvan006884.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031381.1:29325684-29327682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00069 0.032 14.7 0.8 2 23 11 33 10 33 0.96 2 18 0.012 0.54 10.8 0.1 7 23 46 62 40 62 0.86 3 18 0.24 11 6.7 1.8 2 23 68 89 67 89 0.96 4 18 7.2e-05 0.0033 17.8 1.5 1 23 93 116 93 116 0.91 5 18 0.001 0.048 14.1 5.1 1 23 122 144 122 144 0.99 6 18 0.0014 0.064 13.7 1.0 1 23 152 174 152 174 0.95 7 18 0.00028 0.013 15.9 2.9 2 23 181 202 180 202 0.97 8 18 0.0054 0.25 11.9 0.5 1 21 207 227 207 228 0.97 9 18 1.3e-05 0.00061 20.1 0.9 1 23 328 351 328 351 0.97 10 18 0.099 4.5 7.9 2.5 3 23 358 379 356 379 0.95 11 18 0.037 1.7 9.2 0.4 1 23 390 412 390 412 0.92 12 18 6.5e-06 0.0003 21.1 0.5 1 23 418 440 418 440 0.98 13 18 6.7e-05 0.0031 17.9 0.6 1 23 446 468 446 468 0.95 14 18 0.47 22 5.8 1.7 3 23 477 497 475 497 0.91 15 18 4.4e-05 0.002 18.5 4.7 1 23 505 528 505 528 0.98 16 18 0.0002 0.0093 16.4 1.4 1 23 537 559 537 559 0.92 17 18 3.9e-06 0.00018 21.8 0.8 1 23 565 587 565 587 0.96 18 18 0.3 14 6.4 2.4 2 23 593 614 592 615 0.93
Sequence Information
- Coding Sequence
- atgaagaaaacaGGAGCaagaaaacaaattgtttGTGAAATATGCAAGGCAGTTTTAAAATCACAATCTTACTATCAACGGCATAAGAAAACTAGACATCCAGCTAAGCCTCTTCAATACATTTGTGATTATGATGGTAAAATATTTACAGCAAAAAGTTATTTAAGGATTCACATGCAAAGACacatagaagaaattttaatttgtaatgtCTGCTGTCGTGCAtacaattcaaaaatatcttttcgTAGTCATCTACTCAGTcatcttgaaaagttttcatgcTCACAATGTAATGCatcattttcacataaatCATTACTTAATAATCATGTCGCAGCTTTTCATATGGACGAGATGCCATTTAAATGTAACTTTTGTACTCGTATGTTTGCCAACAAATCAGCACgcaataatcatcatcaaacacacaaaaataaaagtgaattaaattttaaatgtctggaatgtaaaatcttttttgaaactAAAGAAGATTTGAgaattcattcttttattcatttcaaagGAGAGATAAAGACTTGTCATATTTgtgatcaaatttttaagagcaCTCGTATGTTGAACATTCATTTGCAGaaacattcaaattcaaaatttcaatgtgaAACGTGTCTTGAGTACTTTGTATTCAAAAATGGTTTAAGAAAACACATTCGTTTGAATCGTTGCAAAGGACCACCACTTTTAATTGctgattataaaaaaaaagatattgaaaCTGACACACTCAATGATACTAAAATTCAAGAGATTGCCAAAAAACAAttggaagaaatttcaaataaagagaaaaaagtcacaaaaaaatctttaaataataatgaagaaaaattgaaaaattttattaaagatgaaaaatcaaattctagtgatgaacaatttaaagaaaataattatgatgatgaagataataagagtgaaattttaaaaccaaaaAGAAAAGCTAGATTTATCACATACACATGTGATAAATGTGgtgaaagtttgaaatttagaaaaaatttagaggctcatatgaaagaaaaacatctTCGAAATACTTATGGATGTCTTTATTGTCCATCATCATTCAAAAGTCGTTGTCTTTTTAAAGAacatacattaaaaattcatggaGTTAAAGAGAGAAttgtatgtgaaaaatttgagTGTGAAATTTGTGGAATGAAATTTGATGTTCGTAGTATTTATTTAACACACAAATTATCTCATGAAGATATTCGTAagtttaaatgtgaaaaatgtgAAGCGTCTTTTAAAAGTgtaggaaatttaaaaagacatCAAGCAATTCATCGAGAGAGTAGAGATTTTCTATGTGATATTTGtgcaaagaaatttaaaactaaacccgcattaaaaattcatagaaaaattcatgCTGATTTTCATGTTTATGTCAATTGTCCATATTGCAAAacaatttgtaaagaaaacaACTTAAAAGTACATATATTTTACCAACATGGTGAGggacaagagaaaaaattcgtTTGTAATGCTTGTAagaaatgctttaaaaatgaatttctattaaaaaggCATTATAGAACTATTCATGAAAACGCTACACGTGGTATAACTTATAATTGTCCTGATTGTGATAGTTCATTCAATCGTCAAAAAGATCTTCGTATGCATTCATTTCAGCATTACAGTGGTCAAATATTTCCTTGTAATGAATGTGGAAAACAATTTCGAAATAAGCGGCTTTTAAACAACCACTCTTTAGTCCATGCTCCTATCAAAGTTTCATGCCATTTATGTAATGCTACGTTTCAAACAATAGGCGGTAGAAGAAAGCATATTGTTCGTCATCATAAAACTGTAGAAAATATAGAATTTGttgttaattttgaataa
- Protein Sequence
- MKKTGARKQIVCEICKAVLKSQSYYQRHKKTRHPAKPLQYICDYDGKIFTAKSYLRIHMQRHIEEILICNVCCRAYNSKISFRSHLLSHLEKFSCSQCNASFSHKSLLNNHVAAFHMDEMPFKCNFCTRMFANKSARNNHHQTHKNKSELNFKCLECKIFFETKEDLRIHSFIHFKGEIKTCHICDQIFKSTRMLNIHLQKHSNSKFQCETCLEYFVFKNGLRKHIRLNRCKGPPLLIADYKKKDIETDTLNDTKIQEIAKKQLEEISNKEKKVTKKSLNNNEEKLKNFIKDEKSNSSDEQFKENNYDDEDNKSEILKPKRKARFITYTCDKCGESLKFRKNLEAHMKEKHLRNTYGCLYCPSSFKSRCLFKEHTLKIHGVKERIVCEKFECEICGMKFDVRSIYLTHKLSHEDIRKFKCEKCEASFKSVGNLKRHQAIHRESRDFLCDICAKKFKTKPALKIHRKIHADFHVYVNCPYCKTICKENNLKVHIFYQHGEGQEKKFVCNACKKCFKNEFLLKRHYRTIHENATRGITYNCPDCDSSFNRQKDLRMHSFQHYSGQIFPCNECGKQFRNKRLLNNHSLVHAPIKVSCHLCNATFQTIGGRRKHIVRHHKTVENIEFVVNFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -