Pvan011339.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031379.1:4730420-4735753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.059 2.7 8.6 8.0 1 23 178 201 178 201 0.90 2 19 8.5e-05 0.0039 17.6 4.4 1 23 210 233 210 233 0.97 3 19 0.00097 0.044 14.2 2.1 3 23 263 284 261 284 0.96 4 19 7.4e-05 0.0034 17.7 0.4 1 23 311 333 311 333 0.98 5 19 0.091 4.2 8.0 1.4 1 23 342 365 342 365 0.96 6 19 0.00044 0.02 15.3 1.6 1 23 371 394 371 394 0.97 7 19 0.00096 0.044 14.2 0.0 1 23 400 422 400 422 0.98 8 19 8.1e-05 0.0037 17.6 3.6 1 20 428 447 428 450 0.96 9 19 0.2 9.1 6.9 3.0 1 23 456 481 456 482 0.95 10 19 0.059 2.7 8.6 8.0 1 23 710 733 710 733 0.90 11 19 8.5e-05 0.0039 17.6 4.4 1 23 742 765 742 765 0.97 12 19 0.00097 0.044 14.2 2.1 3 23 795 816 793 816 0.96 13 19 0.00066 0.03 14.7 1.2 1 23 825 848 825 848 0.94 14 19 7.4e-05 0.0034 17.7 0.4 1 23 870 892 870 892 0.98 15 19 0.0011 0.05 14.1 0.7 1 23 901 924 901 924 0.98 16 19 0.00044 0.02 15.3 1.6 1 23 930 953 930 953 0.97 17 19 0.00011 0.0051 17.2 0.1 1 23 959 981 959 981 0.99 18 19 8.1e-05 0.0037 17.6 3.6 1 20 987 1006 987 1009 0.96 19 19 0.086 3.9 8.1 3.7 1 23 1015 1040 1015 1041 0.95
Sequence Information
- Coding Sequence
- atGAGCagtcaatttaaaatgtgtCGACTGTGTATGGTATATAAAGGAAGTGATGAACTTGAATCGATTTTTAAAGCAGAAACAGCAAGAATTGctttggaaatttatttgatttctgGAATTAAgATCATGGAATTTGCATCACATAAAATTTCAGCATTAATTTGTTCAACTTGCGTAAAAGATCTCACAAGAGCAATAAAATTCAGGAAATTATGCTTAGAAtctgatgaatttttcaaaaaattactcCAAGCAGTTGAGTCTACAGTATGGAgtgaaaagtataaaaatatttttagtcattCAGAATATCCCAATGATGAGGAAAAATTGATCAAAGTTGAGCCATTTGAATAtgattttgaaacaatttttgatgaaaatgcaGAAATATTAGATTATGCTGGAAAACAGAAAGAActagaagaaaaaagtgatgattattttgataatgatGAACAACCTGCAAAAAGATCATCAGATTCTGATGACAGTGATTTGAATGTGAAGCGTAATGAACATGGCGAATTTCAGTGCAAACTTTGTCACAAAAACTTCACGAGACATTATTCATTGAAATGTCACATTTATGCAGtacataagaaaataaataaaacagaaaTGCATAAATGTGAAGAATGTgggaaattatttaaattaaaatattatttacAAAAACACTTGAAACGTTCTCATCCTCAATTCAAAACGAAATTAGGATTGATGGATGACAAgaaagatgatgaagatgaagttTTCAAATCAAAGATCACTGGAATCAATTGTCCTTTCTGTAATAAATACCTCACAAGTCGTCATAGCTTGAAAGATCACATTCGAGTGAAACACGAATTCACTAATGCCAATGAAAAACATATGAAAGCgacacattttaaaattaaagaaaatgataaaaaggaGAATAATTATCCGTGTTCTATTTgtggaaaattattaaagtctaaaggAAATCTCTCAACACATGAAAAAACTCATCGAGTTTTGAGTCCATCCGAATATTACTACTGTGATCTCTGTGGTAACAAATTTAAAGGAAAAGGAGAAATGacatttcatattaaaaaacgACATTTGTATAAAATAAGATATCCATGTGAAAAGTGTGGAAAATCATGGAGAACAGGTCATCAACTAAGaaaacatattaaaatttttcatgataatATTAGGGAATTCAAATGTGAATGGTGTGGAAAAGACTTTGGTGACAAAAACATTTTGGCAGCTCATGTTAGGATCCATACAGGAGAACAACCTTTTCAATGTAAATATTGCGATAGAAAATTCACTCATCAAaCTGACATGAGAAGACATCAATGGGGTCATACTGGTAGACGGCCGTACCAATGCAGTTCTAGTTCGTGTGGAAGAGGCTTTATGAAAAAAGCAGAGCTAGTTTCTCATGAGTCTCGATGTCATCATCATATAAATGCACCAGTAATTTTAAAACCAGAGCAGAATCATGCAAAGTCTCTTCAGTATCAATACGAAATGCtctctttggtgaaattttatcataaaatcatGAGCagtcaatttaaaatgtgtCGACTGTGTATGGTATATAAAGGAAGTGATGAACTTGAATCGATTTTTAAAGCAGAAACAGCAAGAATtgctttagaaatttatttgatttctgGAGTTAAgaTCATGGAATTTGCATCACATAAAATTTCAGCATTAATTTGTTCAACTTGCGTAAAAGATCTCACAAGAGCaataaaattcagaaaattatGCTTAGAAtctgatgaatttttcaaaaaatcgcTTCAAGCAGTTGAGACTACAGTATGGAgtgaaaagtataaaaatatttttagtcattCAGAATTTCCCAATGATGAGGAAAAATTGATCAAAGTTGAGCCAGTTGAATATGgttttgcaacaatttttgatgaaaatgcaGAAATGTTAGATTATGCTGGAAAgcaggaagaagaagaagaacaagaaagtgataattattttgataatgatAAACAACCTGCAACAAGCAGTGAAAAGAAACCCGttcaaaagagaagaagaaggagAAGAAGATCATCAGATTCTGATGACAGTGATTTGAATGTGAAGCGTAATGAACATGGCGAATTTCAGTGCAAACTTTGTCACAAAAACTTCACGAGACATTATTCATTGAAATGTCACATTTATGCAGtacataagaaaataaataaaacggAAATGCATAAATGTGAAGAATGTgggaaattatttaaattaaaatattatttacaaaaacACTTGAAACGTTCTCATCTTCAACTCAAAAAGAAATTAGGATTGATTGATGATAAcaaagatgatgaagatgaagttTTCAAATCAAAGATCACTGGAATCAATTGTCCTTTCTGTAACAAATACCTCACAAGTCGTCATAGCTTGAAAGATCACATTCGAGTGAAACACGAATTCACTAATGCCAATGAGAGATATTTATGTGATTTTTGCGGCAAAGATTTCCAACTTAAATATTATCTTCTTAGACACATGAAAGcaacacattttaaaattaaagaaccaAAAAAcgaaacaattaaaaaagaaaaggataAAAAGGAGAATAATTATCCGTGTTCTATTTgtggaaaattattaaagtctaaaggAAATCTCTCAACACATGAAAAAACTCATCGAGTTTTAAGTCCATCAGAATATTACTACTGTGATCTTTGTGGTAACAAATTTAAAGGAAGAGGAGAAATGACGGTTCATATTAAAAAACGACATTTGTATAAAATAAGATATCCATGTGAAAAGTGTGGAAAATCATGGAGAACAGGTCATCAACTAAGaaaacatattaaaatttttcatgataatATTAGAGAATTCAAATGTGAAtgGTGTGGAAAAGACTTTGGTGAAAAGAACAAATTAGTAGCTCACGTTAGGATCCATACAGGAGAACAACCTTTTCAATGTAAATATTGCGATAGAAAATTCACTCATCAAaCTGACATGAGAAGACATCAATGGGGTCATACTGGGAGAAGACCATACCAATGCAGTTCTAGTTCGTGTGGAAGAGGCTTTATGAAAAAATCAGAGCTAGTTTCTCATGAGTCTCGATGTCATCATCATATAAATGCACCAGTAATTTTAAAACCAGAGCAGAATCATGCAAAGTCCCTTCAGTATCAATACGAAATGCtgtaa
- Protein Sequence
- MSSQFKMCRLCMVYKGSDELESIFKAETARIALEIYLISGIKIMEFASHKISALICSTCVKDLTRAIKFRKLCLESDEFFKKLLQAVESTVWSEKYKNIFSHSEYPNDEEKLIKVEPFEYDFETIFDENAEILDYAGKQKELEEKSDDYFDNDEQPAKRSSDSDDSDLNVKRNEHGEFQCKLCHKNFTRHYSLKCHIYAVHKKINKTEMHKCEECGKLFKLKYYLQKHLKRSHPQFKTKLGLMDDKKDDEDEVFKSKITGINCPFCNKYLTSRHSLKDHIRVKHEFTNANEKHMKATHFKIKENDKKENNYPCSICGKLLKSKGNLSTHEKTHRVLSPSEYYYCDLCGNKFKGKGEMTFHIKKRHLYKIRYPCEKCGKSWRTGHQLRKHIKIFHDNIREFKCEWCGKDFGDKNILAAHVRIHTGEQPFQCKYCDRKFTHQTDMRRHQWGHTGRRPYQCSSSSCGRGFMKKAELVSHESRCHHHINAPVILKPEQNHAKSLQYQYEMLSLVKFYHKIMSSQFKMCRLCMVYKGSDELESIFKAETARIALEIYLISGVKIMEFASHKISALICSTCVKDLTRAIKFRKLCLESDEFFKKSLQAVETTVWSEKYKNIFSHSEFPNDEEKLIKVEPVEYGFATIFDENAEMLDYAGKQEEEEEQESDNYFDNDKQPATSSEKKPVQKRRRRRRRSSDSDDSDLNVKRNEHGEFQCKLCHKNFTRHYSLKCHIYAVHKKINKTEMHKCEECGKLFKLKYYLQKHLKRSHLQLKKKLGLIDDNKDDEDEVFKSKITGINCPFCNKYLTSRHSLKDHIRVKHEFTNANERYLCDFCGKDFQLKYYLLRHMKATHFKIKEPKNETIKKEKDKKENNYPCSICGKLLKSKGNLSTHEKTHRVLSPSEYYYCDLCGNKFKGRGEMTVHIKKRHLYKIRYPCEKCGKSWRTGHQLRKHIKIFHDNIREFKCEWCGKDFGEKNKLVAHVRIHTGEQPFQCKYCDRKFTHQTDMRRHQWGHTGRRPYQCSSSSCGRGFMKKSELVSHESRCHHHINAPVILKPEQNHAKSLQYQYEML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -