Pvan017227.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- zfy1
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:4909632-4912630[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0007 0.032 14.7 1.8 1 23 78 100 78 100 0.98 2 19 0.00044 0.02 15.3 4.3 1 20 105 124 105 126 0.94 3 19 0.018 0.81 10.3 2.2 3 23 128 149 127 149 0.95 4 19 0.00013 0.0061 16.9 2.1 2 23 160 182 159 182 0.96 5 19 0.00074 0.034 14.6 0.2 3 23 192 213 191 213 0.97 6 19 1.8e-06 8.3e-05 22.8 1.0 1 23 245 267 245 267 0.96 7 19 1.4e-05 0.00064 20.0 3.7 1 23 271 293 271 293 0.96 8 19 4.1e-06 0.00019 21.7 2.6 1 23 299 321 299 321 0.97 9 19 3.6 1.6e+02 3.0 0.6 2 23 327 348 326 348 0.85 10 19 0.22 10 6.8 0.4 1 23 353 376 353 376 0.94 11 19 1.2 53 4.5 0.4 2 17 567 582 566 588 0.89 12 19 0.0015 0.07 13.6 1.6 2 23 596 617 595 617 0.98 13 19 1.2 56 4.5 0.5 3 23 624 644 622 644 0.84 14 19 3.5e-06 0.00016 21.9 0.8 3 23 652 672 650 672 0.97 15 19 7.6e-06 0.00035 20.9 0.9 1 23 676 698 676 698 0.98 16 19 0.00063 0.029 14.8 2.1 3 23 706 727 704 727 0.95 17 19 4.6e-05 0.0021 18.4 3.5 1 23 742 764 742 764 0.99 18 19 0.47 22 5.8 0.1 2 23 779 801 778 801 0.95 19 19 0.00036 0.016 15.6 0.9 1 23 806 829 806 829 0.97
Sequence Information
- Coding Sequence
- ATGACAACAGTAGAAGTCAATACTTTCTACATCAAAATTGAACCAGATGaagttaatgaaaatgaaactaaaaCAATTTCTGCTAATAAGGAAGCAAAACAAATACAAACTGGAAATGTTCCTAATAAACAAACTATATctacaacaataaaaaatttacaaagaacAGATTCTTTGGAAAAATTAACAGCTATAGCAAAAGAGTCCAGAGAAAAATCTCCACAACAAACTTTTATCTGCTCAATTTGCAACTTATTTTTTGActcaaagcaaaaattttcttctcatatgAAAATCCATCAACAACCATCACATCAATGTCCAAAAtgtgatagaaaatttaaatcagaaaAACATTTGGCAAAACATGAATGtgcaatttgtaaaatttgtggacataaaaatgtttcaaaaagtGACTTAAGAATGCACATGAAGCAAAATCATAGTGAAgctgcaaataaaatttacacagTTCAATGTGACTATTGTGGCAAGCATATAAAGACCAAAACTTATTTAATCCATCACATCAGAGCTGAACATATTAGAGATGAAAAAACACGACTTTTATGCAGCATTTGTGGagtaaattttccaaataaatttatgcttaATCAACatgttaaaatttctcattcagAAATGATTGGATGCAAATTATGTGGCAAAATGGTAAAACCTCTTTGTATGCCCTATCACATGAAACAAGTTCATGcaagtgaaagaaattttttatgtacaaTTTGTTCCGCTTCTTTTAAAACTCGTGATAATTTGAAGGATCACATGATgactcataataaaaattatgtctGTCATATTTGTAACAAAAGATTTTCACGACGGCATCAATTGAATGGTCATTTGGCACTTCATAATAATCCAGATGCTTTTTCATGTCAAGTTTGTGGTCATAAATATTCAACAGCAAGTTACCTTAAAAGACACATGAAAGCACATCAAGAAAGCaatgtaaaatgtaaaatatgtGGCATTGATGTTAATGTTTTAAGTCTTCAttatcatatgaaaaattcacatcCATTTGATCGATTTCAATGCAGTAAATGTGGTGCAACTGGATTTGGAAGTCAACGAGAATTTAGTGAACATTTGACATtgcatgaaaaagaaagagttgaaattgaacaacagcagcaaattgaaattgaattggaaaaagaaagaatgagatTACAAAGGGAAAaggaggaagaagaagaacgATTGAAAGCTTTGGCAGCACTTGAAgctaagaaaattaaaactaaaaaagttgattttaaaaagaaagaaaaaactcaaATGAAACAAGTCaaaattattgtgaaaaaaattaaaacaaaagaattagaaaaagaaaataaaattgaaattcaagaaGAAGTTGAAGAAGCTGAAGAAGCTGAAGAGGAAGAAGACGAAGAACCAATTGTAGAATTTCTGGATGAATATGTTAATGAGGATCATTTTGAAGATGATTATGattttcaacatcaaaacacaactgaatttaatgaaaaatcgtCAGAAGTTAAAGAAGAAACATCAACTTCCATCATTAATGAATCACTACAAGTTCAAAGGCCATTTGATATGTTTGTCTGCGATATTATTTCgaaaagaggaagaaagaaaaaagtagagaaaaattcaattccaaAATGTATAAAAGTCCCTTCAAATGTTATTCTAATATGTGACATGTGTGGTGAAGAAtatgacaaaaaatcaaaacttctTGCTTGCATTAAAAAACATATTGGAGTAAATGATCAACAAAAGTGTGAAATTTGCCTTAAAATTTTCCCTAATTTGGTCTGTTTAAGGCAGCATTTGAAGTCACATGATAGTACAATGATTGCATGTGAAATTTGTGGTAAACGAGTGAAACCTTTATGCATGACAAGTCACATTAAACAAGTTCATACAGCCTACAAAACTTTAGCTTGCAGCATTTGCGAAAAAGTCTTCAAAACAAAGCAAAATTTAAGGGATCATGAAAAAACTCACAATAAAACTTTCCAATGTGAAGTTTGTGGTCAACATTTTTCACGTGGAGCACAATTGAATGATCATATGTTAAAACATGATTCACCAGAATTACTTGATTGTCCTCATTGCAATTTAAGACTTTCAGATCGTCGATCATTAAAGAAACACATCAAAAACATGCATGTCGAAAGACCAGATGGAACAAGAgcaaaacaagagaaaaacttCAAATGTGAACTTTGCGATTATTCTTGTGTTCAAAagggaaatttaaaaattcactacaaaaaacatgaaaaatatcaagcaAAACTTCGAGCAAATCCTGATGcattaaaatgtgaaatttgtgAAGCACTTTTTAGGTcagaattaattttgaaaattcacatGCAAAAAGTTCATTCAGATGAAAGATTTCCATGTGGACATTGTGAAAATGTTCTAAAAACTAAAAGCAGTTTGTGGTCACATTTAAGAAAAGTTCATCAAATCGAgcctgaaaaaagaaagaaaaaagaaaaatcagaaaaagttgaaggtgaaaaaaagaaaagacgaaaaagaagaaaaagaaatgaaaatggtgAACTTgtagaaagagaagaaattgaaaataatgtaaaagttattgaaattcaTAGTGTTGCTGATATGGAAtattattga
- Protein Sequence
- MTTVEVNTFYIKIEPDEVNENETKTISANKEAKQIQTGNVPNKQTISTTIKNLQRTDSLEKLTAIAKESREKSPQQTFICSICNLFFDSKQKFSSHMKIHQQPSHQCPKCDRKFKSEKHLAKHECAICKICGHKNVSKSDLRMHMKQNHSEAANKIYTVQCDYCGKHIKTKTYLIHHIRAEHIRDEKTRLLCSICGVNFPNKFMLNQHVKISHSEMIGCKLCGKMVKPLCMPYHMKQVHASERNFLCTICSASFKTRDNLKDHMMTHNKNYVCHICNKRFSRRHQLNGHLALHNNPDAFSCQVCGHKYSTASYLKRHMKAHQESNVKCKICGIDVNVLSLHYHMKNSHPFDRFQCSKCGATGFGSQREFSEHLTLHEKERVEIEQQQQIEIELEKERMRLQREKEEEEERLKALAALEAKKIKTKKVDFKKKEKTQMKQVKIIVKKIKTKELEKENKIEIQEEVEEAEEAEEEEDEEPIVEFLDEYVNEDHFEDDYDFQHQNTTEFNEKSSEVKEETSTSIINESLQVQRPFDMFVCDIISKRGRKKKVEKNSIPKCIKVPSNVILICDMCGEEYDKKSKLLACIKKHIGVNDQQKCEICLKIFPNLVCLRQHLKSHDSTMIACEICGKRVKPLCMTSHIKQVHTAYKTLACSICEKVFKTKQNLRDHEKTHNKTFQCEVCGQHFSRGAQLNDHMLKHDSPELLDCPHCNLRLSDRRSLKKHIKNMHVERPDGTRAKQEKNFKCELCDYSCVQKGNLKIHYKKHEKYQAKLRANPDALKCEICEALFRSELILKIHMQKVHSDERFPCGHCENVLKTKSSLWSHLRKVHQIEPEKRKKKEKSEKVEGEKKKRRKRRKRNENGELVEREEIENNVKVIEIHSVADMEYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -