Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.5e-08 5.1e-05 23.2 1.5 12 44 34 63 27 63 0.90

2 10 0.0022 1.5 8.9 0.8 14 44 68 95 64 95 0.84

3 10 0.082 56 3.9 6.0 2 43 116 149 115 150 0.84

4 10 0.014 9.2 6.4 4.5 11 41 149 177 139 180 0.78

5 10 0.61 4.1e+02 1.1 0.2 18 40 183 202 178 205 0.83

6 10 0.012 8.1 6.5 3.4 14 41 207 231 201 234 0.87

7 10 0.53 3.6e+02 1.3 1.2 14 41 237 261 231 262 0.68

8 10 4.2 2.9e+03 -1.6 2.2 12 23 265 276 258 282 0.78

9 10 0.0023 1.6 8.8 4.1 3 43 285 322 283 323 0.92

10 10 0.0073 5 7.2 2.8 17 44 330 354 323 354 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.5e-08	5.1e-05	23.2	1.5	12	44	34	63	27	63	0.90
2	10	0.0022	1.5	8.9	0.8	14	44	68	95	64	95	0.84
3	10	0.082	56	3.9	6.0	2	43	116	149	115	150	0.84
4	10	0.014	9.2	6.4	4.5	11	41	149	177	139	180	0.78
5	10	0.61	4.1e+02	1.1	0.2	18	40	183	202	178	205	0.83
6	10	0.012	8.1	6.5	3.4	14	41	207	231	201	234	0.87
7	10	0.53	3.6e+02	1.3	1.2	14	41	237	261	231	262	0.68
8	10	4.2	2.9e+03	-1.6	2.2	12	23	265	276	258	282	0.78
9	10	0.0023	1.6	8.8	4.1	3	43	285	322	283	323	0.92
10	10	0.0073	5	7.2	2.8	17	44	330	354	323	354	0.76

Coding Sequence: ATGTCAGTTTCTAATGTAAAAATTGATGCAGACCGTGAATTTCTTTTGGTTCTGAATGATGAAAgtcaagaaaataatttgaaatcaaaaactgaaaaagaaagaaaaaattttgaagtttgcAGCAtttgtgaaaagaaattaagttcaaaaaatactttgattCGACACATGAAACAACAACatccaaatgaaatttcatcaaaaatttattactgtgATCATTgtgatttgaaattcattcagAAAGGTTCcttaatttctcatttaaagtcaaaacatcaaaaaggaaaagaaattaaatttgaatgcgATTTTGatgggaaaatttttgagacaagaaataaactttatcatcatatgaaaaatgttcatCAAACTATTAAAGAATGCAAGATTTGTGGAAGAAAAGTCAAACATCTATCAAAACATATAAATGAAGTTCATtataaagaagatgaaaatattcaatgtcAGTTTtgcattaaaacatttaaaaatcaaaaaaattttaatattcatctCAAATCACACAACAAAGAGCAACAATGTCTAGTGTGCGGATATAAATTTGCATTAACAGCTCAATTAAGAGAGCATTTAAAAGTTCATGATAATAAATCTGTTTTCCGGTGTGTAACTTgtcagaaaaaattaaaaacccgttcaaatttgaaaatacatttgaaaactcacaataaaaatcgatcaaaaccattaaaatgtcaattgTGTGAATATTCAACTGATATTAAACGAGATTTAACAAGACATCTTAAAACTCATGATGaaaatcgtaaaaaatttcttaaatgtcAAAAGTGTGATTATAAAACTGATACAAAATACCATTTAAAGAGACACTTTCAAATTCACAATCCAAATCGAGTAAAATATCCATGTTTATATTGCAATTATGAAACAACTGAAAGAAGCCATTTAGAAACTCATCTTAGAATCAAGCATGATCCAAACAGAATCAAATGTCTTACATGTCCTCATTGTGATTATAAaactaatgaaaaaagaaattttgctcGTCATCTCAATGacaaacataataaaaattaa
Protein Sequence: MSVSNVKIDADREFLLVLNDESQENNLKSKTEKERKNFEVCSICEKKLSSKNTLIRHMKQQHPNEISSKIYYCDHCDLKFIQKGSLISHLKSKHQKGKEIKFECDFDGKIFETRNKLYHHMKNVHQTIKECKICGRKVKHLSKHINEVHYKEDENIQCQFCIKTFKNQKNFNIHLKSHNKEQQCLVCGYKFALTAQLREHLKVHDNKSVFRCVTCQKKLKTRSNLKIHLKTHNKNRSKPLKCQLCEYSTDIKRDLTRHLKTHDENRKKFLKCQKCDYKTDTKYHLKRHFQIHNPNRVKYPCLYCNYETTERSHLETHLRIKHDPNRIKCLTCPHCDYKTNEKRNFARHLNDKHNKN

Sequence clustering based on sequence similarity using MMseqs2