Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031382.1:12915838-12916974[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 4e-08 2.7e-05 24.1 3.5 14 44 58 85 51 85 0.90

2 10 0.065 44 4.2 0.0 15 43 91 116 86 117 0.82

3 10 6 4e+03 -2.1 1.4 19 25 153 159 143 166 0.80

4 10 0.0062 4.2 7.4 5.0 11 29 172 190 155 200 0.72

5 10 0.00014 0.092 12.8 1.5 12 40 199 224 195 229 0.89

6 10 0.062 42 4.2 3.1 2 39 218 251 217 258 0.76

7 10 0.55 3.7e+02 1.2 2.8 17 41 262 283 246 285 0.78

8 10 1.2 7.9e+02 0.2 1.3 13 26 288 301 284 311 0.77

9 10 0.65 4.4e+02 1.0 1.6 6 29 310 333 305 343 0.72

10 10 1.5 1e+03 -0.2 6.7 15 44 349 375 335 375 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	4e-08	2.7e-05	24.1	3.5	14	44	58	85	51	85	0.90
2	10	0.065	44	4.2	0.0	15	43	91	116	86	117	0.82
3	10	6	4e+03	-2.1	1.4	19	25	153	159	143	166	0.80
4	10	0.0062	4.2	7.4	5.0	11	29	172	190	155	200	0.72
5	10	0.00014	0.092	12.8	1.5	12	40	199	224	195	229	0.89
6	10	0.062	42	4.2	3.1	2	39	218	251	217	258	0.76
7	10	0.55	3.7e+02	1.2	2.8	17	41	262	283	246	285	0.78
8	10	1.2	7.9e+02	0.2	1.3	13	26	288	301	284	311	0.77
9	10	0.65	4.4e+02	1.0	1.6	6	29	310	333	305	343	0.72
10	10	1.5	1e+03	-0.2	6.7	15	44	349	375	335	375	0.80

Sequence Information

Coding Sequence: atgtcaacaacaaaaattcttaaattcaaatcacTCATTGAAGaaacaacagaaaataaatttgaaactcaaaaaccatcaaaaagtgtcaaaaatgaaaaaaatcgtgatcttttgataattttaaacaacggaagaaaaagattgaaaattgaaccaaaagaaaaagtcaaaaaggaaataatttgtaaaatttgcaagaagaaaattaaaagaaaaaataatttaaaaacacatttgAAGACAATGCATTCAGATGATCCaagattaaaagttttctcttgtgatttttgtggaatgaatttttttagaaaatcttcaatcattttgcatatgaaaaaatttcatgcagatagaaaaatcacaaaatatgAATGCGATTTTgatggtaaattttttttaacaagaacaatatttttgattcacATGCGGTACCATCGGAAAATTGCCAAATGTtgcgaaatttgtaaaaaatattttataaatttaaatcaacacaaaaaattagttCATTCAACAGAAAATGACAAAGTTCAATGCaaaatttgtgataaaaattttaaaaaccaaattttaCTAAACGTTCATCTCAAAACTCacgataaaaaatatcaatgccAAAAATGTGGACAAAAAATTGCAAGCACTTCTTCTTTAAAGCAACATATGGAATTTCACGAAAAtacaaatgaatttcaatgtgaaatttgtttaaaaaagtttgcaCATCAACTAAGCTTAAAAAACCACATGAAAACTCATGACGAAAATCGACCAAAGCCACACAAATGTCAATTTTGTGATTATTCCActgatatcaaaaaaaattttacaaatcatCTTAAAACTCATGATAAAAAccgcgaaaaaaatttgaaatgttcaATTTGTGATTATAAAACAGATGACAAAGCAAGTCTTAGGAGACATTCACAAATTCATAATCCAAATcgtgaaaaatttccatgtcTGTATTGCAATTACGAAGCAGCTCAAAAAGGTCATTTAAATagacatttgaaaattcatgatgctgataaattcaaaaatcataaatgtcAACATTGTACTTTTGCAACTGAATACAAAAGCTATTTAAAAGCTCACATAAAAACTATTCATaataaacaacaataa
Protein Sequence: MSTTKILKFKSLIEETTENKFETQKPSKSVKNEKNRDLLIILNNGRKRLKIEPKEKVKKEIICKICKKKIKRKNNLKTHLKTMHSDDPRLKVFSCDFCGMNFFRKSSIILHMKKFHADRKITKYECDFDGKFFLTRTIFLIHMRYHRKIAKCCEICKKYFINLNQHKKLVHSTENDKVQCKICDKNFKNQILLNVHLKTHDKKYQCQKCGQKIASTSSLKQHMEFHENTNEFQCEICLKKFAHQLSLKNHMKTHDENRPKPHKCQFCDYSTDIKKNFTNHLKTHDKNREKNLKCSICDYKTDDKASLRRHSQIHNPNREKFPCLYCNYEAAQKGHLNRHLKIHDADKFKNHKCQHCTFATEYKSYLKAHIKTIHNKQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250403;
90% Identity: iTF_01250403;
80% Identity: iTF_01250403;