Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 8.9e-06 0.006 16.5 3.9 12 44 37 66 32 66 0.89

2 6 0.057 39 4.4 1.7 14 44 71 98 65 98 0.72

3 6 0.0016 1.1 9.3 3.0 2 28 119 143 118 153 0.80

4 6 0.00058 0.4 10.7 3.1 10 39 152 178 146 186 0.73

5 6 0.11 74 3.5 2.0 14 36 182 201 177 205 0.72

6 6 0.0071 4.8 7.2 3.0 9 40 206 240 198 246 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	8.9e-06	0.006	16.5	3.9	12	44	37	66	32	66	0.89
2	6	0.057	39	4.4	1.7	14	44	71	98	65	98	0.72
3	6	0.0016	1.1	9.3	3.0	2	28	119	143	118	153	0.80
4	6	0.00058	0.4	10.7	3.1	10	39	152	178	146	186	0.73
5	6	0.11	74	3.5	2.0	14	36	182	201	177	205	0.72
6	6	0.0071	4.8	7.2	3.0	9	40	206	240	198	246	0.71

Coding Sequence: atgtcaattgaaaattttaaattcgatTCAAATCGTGAATTTCTAATAAGTCTAGACTCAGAAAATGAACAACAACACAATAAAGTGAACAAGAAAGCAAAGCagatcaaaaatgaaaaacatattttttgcaacattTGTGAGAAGAAATTGAGttcaaaaagtaaattgaCGCAGCATATGAAAAATCTTCATCCAAACGAAATTAcatcaaaagtttatttttgtgatCAATGTGAcctaaaatttatcaaaaaaagttctttagttaaacatttaaaatcaaaacatcaaaaagaaaaagaaataaaatttgaatgcgattttgatggaaaaatttttgattctaaagcaaaaatttatagtCATATGAAAGCATGTCATCGAAccattgaaaaatgtaatctTTGTGGAAAGAAAGTACAATTATTAAATCAACATATGAGTCAAGTACATCCTAtggaagatgaaaaatttcaatgccaGATTTgcaggaaaaaatttaaaaatcacagTTATTTGAACGTTCATCTTAAAACACACAACAAACAACATCAATGTCAACTttgtggaaaaaaatttccaaacttAACTCGATTAAAagaacatcaaaaaattcacgAAAATCAATTTGCTTTCCGATGCGTGCAatgtcagaaaaattttagttctCCATCAAGTTTAAGAACTCATTTGAAGACTCATAACaaaaatagaacaaaaaaacataaatgtCAACAATGTGAATAA
Protein Sequence: MSIENFKFDSNREFLISLDSENEQQHNKVNKKAKQIKNEKHIFCNICEKKLSSKSKLTQHMKNLHPNEITSKVYFCDQCDLKFIKKSSLVKHLKSKHQKEKEIKFECDFDGKIFDSKAKIYSHMKACHRTIEKCNLCGKKVQLLNQHMSQVHPMEDEKFQCQICRKKFKNHSYLNVHLKTHNKQHQCQLCGKKFPNLTRLKEHQKIHENQFAFRCVQCQKNFSSPSSLRTHLKTHNKNRTKKHKCQQCE

Sequence clustering based on sequence similarity using MMseqs2