Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-05 0.011 15.7 2.6 13 43 38 65 33 66 0.91

2 9 4.7e-05 0.032 14.2 2.0 6 44 65 98 64 98 0.90

3 9 0.016 11 6.2 5.2 2 43 119 153 118 154 0.80

4 9 0.0015 1 9.4 7.7 12 40 155 183 147 187 0.76

5 9 0.02 14 5.8 4.7 14 41 183 207 178 210 0.85

6 9 0.62 4.2e+02 1.0 2.4 16 39 213 233 208 247 0.75

7 9 1.4 9.4e+02 -0.1 3.4 7 41 233 265 227 270 0.72

8 9 0.16 1.1e+02 2.9 1.2 15 40 272 294 266 301 0.86

9 9 0.01 6.9 6.8 4.5 1 43 287 326 287 327 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-05	0.011	15.7	2.6	13	43	38	65	33	66	0.91
2	9	4.7e-05	0.032	14.2	2.0	6	44	65	98	64	98	0.90
3	9	0.016	11	6.2	5.2	2	43	119	153	118	154	0.80
4	9	0.0015	1	9.4	7.7	12	40	155	183	147	187	0.76
5	9	0.02	14	5.8	4.7	14	41	183	207	178	210	0.85
6	9	0.62	4.2e+02	1.0	2.4	16	39	213	233	208	247	0.75
7	9	1.4	9.4e+02	-0.1	3.4	7	41	233	265	227	270	0.72
8	9	0.16	1.1e+02	2.9	1.2	15	40	272	294	266	301	0.86
9	9	0.01	6.9	6.8	4.5	1	43	287	326	287	327	0.87

Coding Sequence: ATGTCAACGAATATTGTAAAGTTCGATTTAAATCAggattttcttttgatattaaatGATGAACGTCAACAACAAActgtaaaaatagaaaacaaaaaagaacaaaatgataagaaaaatgaaaatatttgcagaatttgtgagaaaaaattgagtgCAAAAGATTATTTGATGCAAcatatgaaaaatcaacatttaaatgaaatttcatcaaaagttTACTTCTGTGATCATTGccctaagaaatttttgtataaaaatgctttgattgctcatttaaaatcaaaacatcaaaaaggaaaagaaattaaatgtgaatgcgattttgatggaaaaacttttaaaactaaagaaaaactttacaaaCATATGAGATATCATCATTTAACTCAATTTAAGGAATGTCAAATTTGtggaaaaaatactaaaagtTTGGATCAACATATGAAACAAGTTCATACTACGGAAActgataaaattcaatgtcagatttgcaaaaaaatttataaaaatcaaaatacgttaaaaattcatcttaaAACACACAACAAACAACATCAATGTCAACTttgtggaaaaaaatttgctagGATTTGTGAATTAAAACAACATTTGAAAACTTACGAAAATCAATTTGCTTTTCGATGCGAGCAAtgtcagaaaaattttgtttctttagcaaatttaagaaatcaTTGGAAAATTCATGACAAAAATCGACAAAAACAACATAAATGCCAACAATGCGAATATTCAACTGATGGAAaacaaaacttgaaaattcatcTTAAAACTCATGATAGGAAccgaattaaaaattttaaatgcaatcAATGTGATTTTAAAACTGACAATAAATCAAATCTTAAGCTTCATCTTCAAATTCACAATCCAAATCGTGCAAAATTTCCATGTTTGTATTGCAAATATGAAAGCACTCGAAGAACTAGTTTGAAAACTCATGTTATTCGTAAACATGCTCAAAAAAGTTGA
Protein Sequence: MSTNIVKFDLNQDFLLILNDERQQQTVKIENKKEQNDKKNENICRICEKKLSAKDYLMQHMKNQHLNEISSKVYFCDHCPKKFLYKNALIAHLKSKHQKGKEIKCECDFDGKTFKTKEKLYKHMRYHHLTQFKECQICGKNTKSLDQHMKQVHTTETDKIQCQICKKIYKNQNTLKIHLKTHNKQHQCQLCGKKFARICELKQHLKTYENQFAFRCEQCQKNFVSLANLRNHWKIHDKNRQKQHKCQQCEYSTDGKQNLKIHLKTHDRNRIKNFKCNQCDFKTDNKSNLKLHLQIHNPNRAKFPCLYCKYESTRRTSLKTHVIRKHAQKS

Sequence clustering based on sequence similarity using MMseqs2