Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.2e-05 0.042 13.8 0.8 17 43 44 67 35 68 0.88

2 9 0.0063 4.3 7.4 1.0 17 44 76 100 69 100 0.82

3 9 0.25 1.7e+02 2.3 6.7 3 43 122 154 120 155 0.73

4 9 0.00016 0.11 12.6 6.5 6 43 149 187 144 188 0.77

5 9 0.0014 0.96 9.5 3.0 12 40 182 207 175 213 0.87

6 9 0.002 1.3 9.0 3.2 7 41 206 236 202 248 0.78

7 9 5.5 3.8e+03 -2.0 0.7 16 40 244 265 237 267 0.63

8 9 0.15 99 3.1 1.2 13 41 271 296 262 299 0.82

9 9 0.12 84 3.3 1.9 5 43 292 327 289 328 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.2e-05	0.042	13.8	0.8	17	43	44	67	35	68	0.88
2	9	0.0063	4.3	7.4	1.0	17	44	76	100	69	100	0.82
3	9	0.25	1.7e+02	2.3	6.7	3	43	122	154	120	155	0.73
4	9	0.00016	0.11	12.6	6.5	6	43	149	187	144	188	0.77
5	9	0.0014	0.96	9.5	3.0	12	40	182	207	175	213	0.87
6	9	0.002	1.3	9.0	3.2	7	41	206	236	202	248	0.78
7	9	5.5	3.8e+03	-2.0	0.7	16	40	244	265	237	267	0.63
8	9	0.15	99	3.1	1.2	13	41	271	296	262	299	0.82
9	9	0.12	84	3.3	1.9	5	43	292	327	289	328	0.78

Coding Sequence: atgttaccaaaaagtgaaaatcaaCTAGTTGCTAGTGAGACAAAATCTGATTTAAATCGTGAATTCCTTATTATtgtgaataaagaaaatgaacaagctataaaaatagaaaataatgaaaaagatggtgctatttgtaagatttgtaaGAAGAAATTGAGTTCAGAAGATATTTTGATGCGTCAtatgaaaaatcttcattcaaatgaaatttcatcaagacTTTATCGCTGTGATCattgtgatttaaaatttattcagaaagGCTCcttaatttctcatttaaaatcaaaacatcaaaaaggaaaagaaatcaaatttgaatgcgattttgatggaaaaatttttgatacaaaaGGAAAACTTTATTATCATATGAAACAATGTCATCGaactattgaaaaatgtaatctTTGTGGAAAGAAAGTACAAGTATTATATTACCATATGAGACAAGTTCATGCTAcagaagataaaaaagttcaatgtcagatttgcaataaaatttataaaaatcaaaatcagttaaaaattcatcttaaAATTCATAACAAGAAACATCAATGTCAACTATGCGGacgtaaattttcaattgttactCAATTAAAggagcatttaaaaattcatgaaaatcgGTTTGCTTTTCGAtgtgaaaaatgtcaaaaaaatttcaattcgccatcaaatttaagttttcattTGAGAAGTCATAACAAAAACAGGATCAAAAAGCATAAATGTAGTCAATGTGATTATTCTACTGATATTAAACAGAATTTCACAGTCCATCTTAAAACTCATGACAAAAATCGAGAAAAACCTTTCAAATGCAATCAATGTGATTTTAAAACTGATCGAAAAGAAAGTCTTAAAAGTCATCTTCAAACTCACAATCCAAATCGAGTAAAATTTCCATGCTTATATTGCAATTATGAAGCAACTCAAAGAAGTGATTTAAAGATTCATGTTAAAAGCAAACATGATCCAAGTAGAATTAAACGTTTTTAA
Protein Sequence: MLPKSENQLVASETKSDLNREFLIIVNKENEQAIKIENNEKDGAICKICKKKLSSEDILMRHMKNLHSNEISSRLYRCDHCDLKFIQKGSLISHLKSKHQKGKEIKFECDFDGKIFDTKGKLYYHMKQCHRTIEKCNLCGKKVQVLYYHMRQVHATEDKKVQCQICNKIYKNQNQLKIHLKIHNKKHQCQLCGRKFSIVTQLKEHLKIHENRFAFRCEKCQKNFNSPSNLSFHLRSHNKNRIKKHKCSQCDYSTDIKQNFTVHLKTHDKNREKPFKCNQCDFKTDRKESLKSHLQTHNPNRVKFPCLYCNYEATQRSDLKIHVKSKHDPSRIKRF

Sequence clustering based on sequence similarity using MMseqs2