Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4e-05 0.027 14.5 0.7 17 44 42 66 36 66 0.90

2 9 0.00017 0.12 12.4 2.1 6 44 65 98 64 98 0.89

3 9 1.5 1e+03 -0.2 0.4 33 44 118 129 104 129 0.72

4 9 0.56 3.8e+02 1.2 6.5 3 43 120 152 118 153 0.78

5 9 0.00047 0.32 11.0 5.1 6 39 147 178 142 182 0.76

6 9 0.061 42 4.3 6.7 12 40 180 205 172 208 0.81

7 9 0.00031 0.21 11.6 5.8 14 41 210 234 201 246 0.85

8 9 0.0013 0.88 9.6 5.7 5 41 260 294 258 297 0.92

9 9 0.66 4.5e+02 1.0 0.3 14 23 299 308 294 316 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4e-05	0.027	14.5	0.7	17	44	42	66	36	66	0.90
2	9	0.00017	0.12	12.4	2.1	6	44	65	98	64	98	0.89
3	9	1.5	1e+03	-0.2	0.4	33	44	118	129	104	129	0.72
4	9	0.56	3.8e+02	1.2	6.5	3	43	120	152	118	153	0.78
5	9	0.00047	0.32	11.0	5.1	6	39	147	178	142	182	0.76
6	9	0.061	42	4.3	6.7	12	40	180	205	172	208	0.81
7	9	0.00031	0.21	11.6	5.8	14	41	210	234	201	246	0.85
8	9	0.0013	0.88	9.6	5.7	5	41	260	294	258	297	0.92
9	9	0.66	4.5e+02	1.0	0.3	14	23	299	308	294	316	0.81

Coding Sequence: atgtctaatagtaataatttcaaatttgatgcAGAATGTGAATTTcgtgtaataaaaattcaaaaagagcAAAACACTGAAGCAGTAATCGAaggaaaacaaaagaaaaaattaaaagatgaaaatatttgtgacATTTGTGAGAAGAACTtgagttcaaaatttaatttgacgCAGCATATGAAAAATCTTCatccaaatgaaatttcatcaaaagtttatttttgcgATCATtgcgatttaaaatttattagaaaaactTCATTGATTactcatttaaaatcaaaacatcaaaaaggaaaagaaattaaatttgaatgcgattttgatggaaaaatttttgatactaaAACAACAATTTATAATCATATGAGAGCATGTCATCGAATTGTTGAAGAATGTAAACTTTGTGGAAAGAAAGTACAAGTATTATATTACCATATGAGACAAGTTCATGCTACAGAAGATAAAAATGTACAATGTCagatttgcaataaaatttataaaaatcaaaaacagttaaaaattcatcttaaAATTCATAACAAGAAATATCAATGTCGAATTtgtaatcataaattttcgttaaatcatcaattaaaagaGCATTTAAAAGTTCATGAAAACCAATTTGCTTTTAGATGTGaaaaatgtcagaaaaattttaagcataCATCAAATTTGAGAACTCATTTGAAAACACATGATAAGAACAGAACTAAAAGATATAAATGCCAACAATGTGATTTTTTAACTGACAATAAACATTATTTGACAAgccattttaaaattcatgacaAGAATcgagaaaaatctttcaaatgcAATCAATGTGATTATAAAACTGATAACAAAAACTGTCTTAAAAGTCATCTTCAAACTCATAATCCAAATCgacaaaaatttccatgtttATATTGCAATTATGAAGGAAACACAAGAGGAAATTTAAACA
Protein Sequence: MSNSNNFKFDAECEFRVIKIQKEQNTEAVIEGKQKKKLKDENICDICEKNLSSKFNLTQHMKNLHPNEISSKVYFCDHCDLKFIRKTSLITHLKSKHQKGKEIKFECDFDGKIFDTKTTIYNHMRACHRIVEECKLCGKKVQVLYYHMRQVHATEDKNVQCQICNKIYKNQKQLKIHLKIHNKKYQCRICNHKFSLNHQLKEHLKVHENQFAFRCEKCQKNFKHTSNLRTHLKTHDKNRTKRYKCQQCDFLTDNKHYLTSHFKIHDKNREKSFKCNQCDYKTDNKNCLKSHLQTHNPNRQKFPCLYCNYEGNTRGNLN

Sequence clustering based on sequence similarity using MMseqs2