Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.1e-06 0.0028 17.6 0.3 17 44 42 66 34 66 0.92

2 9 0.0046 3.1 7.9 0.7 14 44 71 98 67 98 0.86

3 9 0.0079 5.3 7.1 3.3 2 43 119 152 118 153 0.90

4 9 1.7e-05 0.012 15.6 4.0 3 38 144 177 142 180 0.82

5 9 0.13 89 3.2 5.2 12 40 180 205 176 208 0.81

6 9 0.00015 0.1 12.6 2.6 15 41 211 234 203 245 0.86

7 9 4.8 3.2e+03 -1.8 0.4 18 36 244 263 235 265 0.61

8 9 1 6.9e+02 0.3 2.3 12 40 268 293 260 297 0.73

9 9 0.028 19 5.4 5.1 16 44 301 326 288 326 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.1e-06	0.0028	17.6	0.3	17	44	42	66	34	66	0.92
2	9	0.0046	3.1	7.9	0.7	14	44	71	98	67	98	0.86
3	9	0.0079	5.3	7.1	3.3	2	43	119	152	118	153	0.90
4	9	1.7e-05	0.012	15.6	4.0	3	38	144	177	142	180	0.82
5	9	0.13	89	3.2	5.2	12	40	180	205	176	208	0.81
6	9	0.00015	0.1	12.6	2.6	15	41	211	234	203	245	0.86
7	9	4.8	3.2e+03	-1.8	0.4	18	36	244	263	235	265	0.61
8	9	1	6.9e+02	0.3	2.3	12	40	268	293	260	297	0.73
9	9	0.028	19	5.4	5.1	16	44	301	326	288	326	0.77

Coding Sequence: atgactaatagtaataattttaaatttgatgcaGAATGTGAATTTcgtgtaataaaaattcaaaaagagcAAAACACTGAAGCAAATATcgaaaaaaaacaagaaaaaaaattaaaagatgaaaatatttgtgacATTTGTGAGAAGAACTtgagttcaaaatttaatttgacgcaacatatgaaaaaagttcatccaaatgaaatttcatcaaaagtttatttttgtgatCACTGtcctaaaaagtttttgttgaaatatCGTTTGATTggtcatttaaaatcaaaacatcaaaaaggaaaagaaattaaatttgaatgcgATTTTgagggaaaaatttttaatacaaaacaaaaactttatgatCATATGAAAGCATGTCATCGaactattgaaaaatgtactCTTTGTGGAAAGAAAGTGCAAGCATTATATCAACATATGAGACAAGTACATGCTAcagaagataaaaaagttcaatgtcAGATTtgccataaaatttataaaaatcaaaaaatgttaaaaattcatcttaaAATTCATAACAAGAAATATCAATGTCAAATTtgtaatcataaattttcgttaaatcatcaattaaaagaGCATTTAAAAGTTCATGAAAACCAATTTGCTTTTAGATGTGaaaaatgtcagaaaaattttaagcaatcATCAAATTTGAGTGCTCATTTGAAAACACATGATAAGAACAGAACTAAAGGATATAAATGTCTACAGTGTGATTTTTTAACTGACAATAAACATCATTTGACAAGCCATCTTAAAATTCATGACAAGAATCGTGAAAAACCTTTCAAGTGCAATCAATGTGATTATAAAACTGATAACAAAAACAGTCTTAAAATTCATCTTCAAACTCATAATCCAAATAGAGTAAAATTTCCATGCTTATATTGCAATTATGAAGGAAACACAAGAGGAAATTTAAACAGACACCTCAAAACAAAACATAATCAAAAcagacttaaaaatttttaa
Protein Sequence: MTNSNNFKFDAECEFRVIKIQKEQNTEANIEKKQEKKLKDENICDICEKNLSSKFNLTQHMKKVHPNEISSKVYFCDHCPKKFLLKYRLIGHLKSKHQKGKEIKFECDFEGKIFNTKQKLYDHMKACHRTIEKCTLCGKKVQALYQHMRQVHATEDKKVQCQICHKIYKNQKMLKIHLKIHNKKYQCQICNHKFSLNHQLKEHLKVHENQFAFRCEKCQKNFKQSSNLSAHLKTHDKNRTKGYKCLQCDFLTDNKHHLTSHLKIHDKNREKPFKCNQCDYKTDNKNSLKIHLQTHNPNRVKFPCLYCNYEGNTRGNLNRHLKTKHNQNRLKNF

Sequence clustering based on sequence similarity using MMseqs2