Pvan014558.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:13297589-13298686[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.5e-05 0.064 13.3 1.7 13 44 42 70 34 70 0.88 2 10 0.0011 0.75 9.8 1.5 14 44 75 102 71 102 0.89 3 10 0.0041 2.8 8.0 8.1 2 44 123 157 122 157 0.89 4 10 3.6e-05 0.024 14.6 8.8 6 43 154 189 150 190 0.80 5 10 0.0083 5.6 7.0 0.6 17 40 189 209 184 215 0.87 6 10 3e-05 0.02 14.9 4.7 5 41 206 238 203 250 0.76 7 10 5.2 3.5e+03 -1.9 1.1 17 40 247 267 239 273 0.61 8 10 0.72 4.9e+02 0.8 4.8 11 40 270 297 260 299 0.80 9 10 0.00082 0.55 10.3 3.7 2 44 291 330 290 330 0.83 10 10 4.1 2.8e+03 -1.6 0.1 35 44 352 361 349 361 0.87
Sequence Information
- Coding Sequence
- atgttattatcAACAAGTTCTGATCAAGTGACATCAACTGAAGCAAAATCTAACTTAAACtgtgaatttcttttgtttataaacaataaaaatcaacaacaaaataaaattcaaaaacgtAAAACCGAAGTTAAAAACATTTGTGACatttgtgagaaaaaattaagcaCTAAAGATAAATTGATTCAGCATATCAAAAATGttcattcaaatgaaattgcaTCAAAAGTTTACTTTTGCGATCATtgtaatatgaaatttattagaaagaaTCGCTTAGTTggtcatttaaaatcaaaacatcagaaaggaaaagaaatcaaatttgaatgtGATTTTGATGGAATAATATTTGATTCTAAACCAAAACTTTGGAGTCATATGAAACAATGTCATCAAACTCTTGAAAAATGTAATCTTTGtggaaaaaaagtaaaaaatttagattctCATATGAAACATATTCATTCTAcagaagatgaaaaagttaAATGTAAAATCTGCGATAAAActctaaaaaatcaatcaaccATGCGAAATCATCTCAAGACTCACAACAAACAACATCAATGTCAAGTATGCGGacgtaaattttcaattgttactCAATTAAAggatcatttaaaaattcatgaaaatcgGTTTGCTTTCCGATGTGaaaaatgtcagaaaaattttaaatcatcatcgAATTTgagaaatcatttgaaaaccCATGACAAAAACAGGATCAAAAAGCATAAATGTCAACAATGTGATTACTCAACTGATGAAAgacaaaatattataaatcatCTCATAACTCATGATAAGAAAcgagaaaaatctttaaaatgcaATCAATGTGATTATAAAACTGATCTAAagagaaactttaaaaaacatCTTCAGATTCACAATCCAAATCGAGTGAAATTTCCATGTTTGTATTGTAATTATGAAGGAACAACAAGAGGTAATTTAAAAACACATCTTAAAACCCAACATAATCCAAATAGAGTCAAACGTTTTAAATGCAGTGAAAGCAATTTTGCTACAGATTATTCAggagttttaaaaaatcatctaataaaaatacacaagaaagctaaaaattaa
- Protein Sequence
- MLLSTSSDQVTSTEAKSNLNCEFLLFINNKNQQQNKIQKRKTEVKNICDICEKKLSTKDKLIQHIKNVHSNEIASKVYFCDHCNMKFIRKNRLVGHLKSKHQKGKEIKFECDFDGIIFDSKPKLWSHMKQCHQTLEKCNLCGKKVKNLDSHMKHIHSTEDEKVKCKICDKTLKNQSTMRNHLKTHNKQHQCQVCGRKFSIVTQLKDHLKIHENRFAFRCEKCQKNFKSSSNLRNHLKTHDKNRIKKHKCQQCDYSTDERQNIINHLITHDKKREKSLKCNQCDYKTDLKRNFKKHLQIHNPNRVKFPCLYCNYEGTTRGNLKTHLKTQHNPNRVKRFKCSESNFATDYSGVLKNHLIKIHKKAKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250431;
- 90% Identity
- iTF_01250431;
- 80% Identity
- iTF_01250431;