Pvan009940.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- lola
- Assembly
- GCA_018290095.1
- Location
- CM031379.1:16306047-16310362[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.6e-09 6.6e-06 25.7 0.0 5 41 355 391 353 394 0.87
Sequence Information
- Coding Sequence
- atgcagcaatttcaaatcaagtggaataatcatttaaaaatatttagtaaaGCACTCTCAAAGTTTTTTGAAGACAAGAAATTCTTAGATGTGATTTTGGTAGTTGAAAATGGAAATCATATAATTCAATGTCATAAAATGGTATTAGCAGCATGCTCGACCTATTTTGccaatattttcaaatgtaatctGCTAGACGATAAAAATCCAGTCATTTGTTTACCCAGTGAGATACAATTATGGGAAATTCAAGCTATTCTTAATTACATGTATAATGGAGAGGTATGCATTTCACAAGACGGACTAAAGAGTTTAGTAAAATGTGCTGAACTTTTGCAAGTTAAAGGCTTGTGGcggaatgaaaaaattgataatgtGAACGTCACATCTACCTCTACTTCAACCTCTACTGTCAACGAGAACACTAATGAGCTACCAAATTATTCGGATATGATTATTAAAACTGAAATTGATATAGatgATATAGAAAATCAGAAGACTGGTTATTACACTCACACATTTGAAAAAGGGAGTGTTGAAAATACCACCAATAATGAAACAAATGGGGAGTTTTCGAATTCTCAACTTATGAGGAAAGagactgaaaaaaatttggaacGAACAAAGAAGAGCCTTCATAAAAAAGACACTGCTGTGACAAAAAACAACTCTAAtgCTATCAACTGTCAAAAACAATTTGAGAACATTATTTGTTCACCTATTCTATATTGGCGTGAGCAGcatgataaagaaattaacgagaaaaaagaaatggtAGATAGTCAGCAAGAAAGAAAGCCagaagatgaaattgaaaaagtggAGGaaaatgatgacgatgaagaGGAGAATGAATTAGATGAGAATAGCAGTCAACATCAGATATtgttttcaaatgaaatgatgatagataatgatgatgaatgtaATTTGTTAATTGCATCAGTTAGTGGTATGAGTGAGGAATCACAGCAGTTTTcagatgataaaaaatcatcaattaatGGATTATATTTAAGAAATCCTCGAGgtAATCAAACTAGACAATACGATGTGAATTCGTTATATCTAGCTCTTGAAGATGTTAGAAATGGAATCAGTATTTATCGagcTGCCCAGAGTCACCACGTTCCCCGTAAAACATTGAGAAACTGGATGAAGCGATTACATATAAAGTCAAAATTTCCGATGCCAAAACAATTAGCCAAAGCTGCTGAGCGAAAAAAATCCGTTCAAATGCATACTACGtcaactatttattttcatgcaaCAACTCTAAGTGTTATCATATTGATTCTTTTGTTATCACATCGAGTTTATTCGCAAATTGGTCAAACAATCAAAGaTTCTATATTAGAATATGACTTGTTAGCTGCAGCAATTTCCGATGTAGAAAGCATCAATAGTGGTGGCGTAAGATATATTGAAGAAGTCAATGGACCAGCGTATTATGAATTTAGATCAAATGCAAATATAAGAAATCCTTATAAAGTGATTGCACCAAATACTCTTAAGGACTTTGTTCTCATTTCAActattaaaattacaaataaatctGATGGATATTTATTTTCGATTGtcAACAGTTTAGACACAACTGTACAGTTCGGAATAAAAGTATCACCAATGCAAAGAAGCTATCTCAACATCACATTAATCTACAATGATCTTCAGAAAGCGACAGATTCATCAGTCTCATTCACATTAACACATGATTCAAAAAATTGGATTAATTTCGCTATACAGATGATTGATGAACGAGTATCATTGTATCATAATTGTCTAAAAATCGATGAACGAAATATCTCAAGACAAATGTTGACATTTGAATCGGCATCGATATTTTATCTCGCACAGGCAGGTTCATATTTGAAAGGAAAGTTTgagGAAAGTCCGAAAAAATGGTTGTATCCAAAAGTTTGTTAcggagaagagaagaaaaaaatgagataa
- Protein Sequence
- MQQFQIKWNNHLKIFSKALSKFFEDKKFLDVILVVENGNHIIQCHKMVLAACSTYFANIFKCNLLDDKNPVICLPSEIQLWEIQAILNYMYNGEVCISQDGLKSLVKCAELLQVKGLWRNEKIDNVNVTSTSTSTSTVNENTNELPNYSDMIIKTEIDIDDIENQKTGYYTHTFEKGSVENTTNNETNGEFSNSQLMRKETEKNLERTKKSLHKKDTAVTKNNSNAINCQKQFENIICSPILYWREQHDKEINEKKEMVDSQQERKPEDEIEKVEENDDDEEENELDENSSQHQILFSNEMMIDNDDECNLLIASVSGMSEESQQFSDDKKSSINGLYLRNPRGNQTRQYDVNSLYLALEDVRNGISIYRAAQSHHVPRKTLRNWMKRLHIKSKFPMPKQLAKAAERKKSVQMHTTSTIYFHATTLSVIILILLLSHRVYSQIGQTIKDSILEYDLLAAAISDVESINSGGVRYIEEVNGPAYYEFRSNANIRNPYKVIAPNTLKDFVLISTIKITNKSDGYLFSIVNSLDTTVQFGIKVSPMQRSYLNITLIYNDLQKATDSSVSFTLTHDSKNWINFAIQMIDERVSLYHNCLKIDERNISRQMLTFESASIFYLAQAGSYLKGKFEESPKKWLYPKVCYGEEKKKMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250218;
- 90% Identity
- iTF_01250218;
- 80% Identity
- iTF_01250218;