Pvan016634.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:2861625-2863785[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-12 5.4e-09 35.6 0.0 2 38 105 141 104 146 0.93 2 3 3.2 3.8e+03 -2.3 0.1 21 28 171 178 170 178 0.90 3 3 7.3 8.6e+03 -3.5 0.0 28 40 277 289 276 290 0.79
Sequence Information
- Coding Sequence
- ATGAAAGCAAAAGCAGacaATTACAAGTCAAgttttaaatttATCACAAAAATGCCACCAACAAAGCGCAATATTTCTTCAGATCCACTTGAATCttcaacatcaattaaaattatcgacATAAAACAAGAATTTAATGATGGAGATGTTGTAATggaaagttttgaaaattatgatgaaaatgaagacaCAGAACAAGATGAATTTGATAATGATGAATACGAATATGAAGAAATGCCAgaacaaaatgtaaataatgaaCAACAACCAcaaaggaagaaaagaaagcgtgataaatatttgaaatacaGCAGAGAGGACCTAAATAAAGCCAGTTTTCTTGTTCTTAATggaaaaatgacaattttcaaagcatcaaaaattttctcaattccAAAAACAACTTTgcattattttgtaaaaaatcttAGAGAAAATAAACCTATAAAAAAGCGTGGAATTGATGCGACATTGACAGaaagtgaagaagaagaaattttagaatggGCAAAAGCAGCATCAGATTTTGGTGTTTATAGAATGAGGGAAGATATAGTTCAAGCTGCCGctgatattttaaaactcaatCAACGACCTGGATTTAGACATGAACTTCCATCAAATGCATGGTCGACaagatttatttcaaaacattcaaaaaatttacatattagAAAACCACATGAATCAGTTGATGaagcaatattttttactaaattttataaatttctttctaaaaataatctatTAGATGTTTTAGATCGACCTGATGCATTTTATGTTATGGAAGATACAAATTTTGAACTCAGTTCTgttattaataattcaatCAATCGAAATGCACTGAGGAAAGCATTAAAGAGAAAAGGTGGCGATCCGaaagaaataagaatgaaagacAGTGTAACTGTCACTTATTGTTTTGGAGCTGATGGAAGAAAATTGCAAGaacttgttatttttaatgagGATTTCAAAGATATTGTACAAGTTGCTTTAGTTGATCAAGaacttcaatcaaaatttctcttcaCAAGAACAAAAACTGGAGGTCATACACGCGATTCATTCAAATGCTACCTACAAAGACTTGATGCTCAACTGAAGGACGTTCAACGAccaatttttatcttttgcaGTGAAACTTTACCACAAGTTAGTTTAGATCTCTATCGATGGTGCAGaggaagagaaattttcataatttcttttataccatttgaaatttgtattCTAGAATTATGcgataaagaattttttggtcTAGATAATTTTGAAtggagaaaagaaattgaaagaattagtgaaaataagaaaattaatgaaattgactTTATTAGATtgctcaaaaaaaataatgatagaatttttgatgataaaataatttttgaaattttcaattcaattggaatttttccatttgatACAAAtagaattattgaaaattttgaagaaccAGAAGAAGAaacatcaattgaaattgtaGAAAAGCCAAAAGTTGAAACACCAAAATCAAAAGATCGTGCTATAATGCtgcatttgataaaaatgaagaaaatgaatgaacaattaagagaaattttaaaagttaaagatttagaaaatattatgaaacttTCTTATAATATTGATaaacaaattgatgaaattaaagctgcaatttaa
- Protein Sequence
- MKAKADNYKSSFKFITKMPPTKRNISSDPLESSTSIKIIDIKQEFNDGDVVMESFENYDENEDTEQDEFDNDEYEYEEMPEQNVNNEQQPQRKKRKRDKYLKYSREDLNKASFLVLNGKMTIFKASKIFSIPKTTLHYFVKNLRENKPIKKRGIDATLTESEEEEILEWAKAASDFGVYRMREDIVQAAADILKLNQRPGFRHELPSNAWSTRFISKHSKNLHIRKPHESVDEAIFFTKFYKFLSKNNLLDVLDRPDAFYVMEDTNFELSSVINNSINRNALRKALKRKGGDPKEIRMKDSVTVTYCFGADGRKLQELVIFNEDFKDIVQVALVDQELQSKFLFTRTKTGGHTRDSFKCYLQRLDAQLKDVQRPIFIFCSETLPQVSLDLYRWCRGREIFIISFIPFEICILELCDKEFFGLDNFEWRKEIERISENKKINEIDFIRLLKKNNDRIFDDKIIFEIFNSIGIFPFDTNRIIENFEEPEEETSIEIVEKPKVETPKSKDRAIMLHLIKMKKMNEQLREILKVKDLENIMKLSYNIDKQIDEIKAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -