Pvan016086.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- -
- Assembly
- GCA_018290095.1
- Location
- CM031382.1:3547796-3549488[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4e-06 0.0047 16.6 0.0 5 38 270 304 266 309 0.89 2 3 9.2e-05 0.11 12.2 0.0 7 35 320 347 315 356 0.87 3 3 2.2e-09 2.6e-06 27.0 0.0 2 38 374 409 373 413 0.93
Sequence Information
- Coding Sequence
- ATGTCGTTCGTAATTAACACgacaattgataaaaataaagaatttatcgAAGCTTTGCGAAATTCATTACATAATGATCTTGAGAAAGATGTTAACTTTATTTGCAAGAATAATGTTAAAGTTACGATGAATAGCTATGTGTTAGCACTTGCAAGTGACTTCTTTAGTGAATTATTGAAAGATATTGTTGATAAGCGGGAAGTTATAAATATTATGGTACCGGATATTCATCCAGatgtattaaaaaaagtttttgaatacATTTATATTGGATATGTTGCATTAGAAACAAGAGCTATGGGTGAATTCATCGAAGCTTGTAATCTTCTCCATCTCAAAGCAACGATAAGTTGTGAAAAGAAACTTGTTTTTGATTCACCACAAACAACATCAGCACCTTCAATAACATCAAATATCACAACAATGATCACAGAATTTGATCcaacaattaaatttgaaacacCAGCTACAACAAGTGTTGCAGATGAGCCAACTGAACATGTCATTCAACAAGCTGATCATACAACAAGTGGACAAATTCTTGAAGTTTATGAGATTTCAAATATTGAAGACACTGACATAACTTATGATGACACAAtggaagaagatgatgatggtgtTGAAGAACATTATGAATTGTTGAATGTCATACCAGAAAGTGAAGTTTCATCACCAACTGTTGCTGCAAGCACAAGTGGCGgtgagaagaaaaaggaaaagaaaaaacgaACATTGACTGAAATTACTGATGTCAGTCCAAAAACGTCGACACCAAAAATGACTTCAAAGACAATTGATGAATCAGTGATGGAACAAGCGATCAAAGAAATCATTTCGAACAACACCAGTTTTCGAGTTGTCAGTGAAAAATATAGCATCCCAAAAACACTTTTATGGCGTAGAGCAAAGAAATTTGGATATGTAAAGacagaaaaacaaaaagatgaTATCAGACTTTTGGCAATTGAAGCAATTAAGCAAGGTGAAAGTCTTATAAGTCTCAGTAAACGATACAATATTCCAATATCGACACTTCAtcgtgaaaaattgaaattgtatgaaaaaggTCAACTGCCTGAAAATGTCAATCTTAagAACCGTTCACGTGGTGAAGACTATGACGATCGACTTCGAAATGCAATCAGTGAAATTTTGAATggaaaaagtcaaaatgaaattgcaaaaaagtaCAACATACCTAAAACTACAATTTGgagaattatcaaaaaaatggGCGGAAAAATTGACACTTCTGACAACCCAGTAACGCCAAAATCAGAAATTGTCGAACAATTGCTTGAAATGAGTAAGAAAAGAACAGTAAAGGATAGTCATagttatgatgatgaaaagatgtaa
- Protein Sequence
- MSFVINTTIDKNKEFIEALRNSLHNDLEKDVNFICKNNVKVTMNSYVLALASDFFSELLKDIVDKREVINIMVPDIHPDVLKKVFEYIYIGYVALETRAMGEFIEACNLLHLKATISCEKKLVFDSPQTTSAPSITSNITTMITEFDPTIKFETPATTSVADEPTEHVIQQADHTTSGQILEVYEISNIEDTDITYDDTMEEDDDGVEEHYELLNVIPESEVSSPTVAASTSGGEKKKEKKKRTLTEITDVSPKTSTPKMTSKTIDESVMEQAIKEIISNNTSFRVVSEKYSIPKTLLWRRAKKFGYVKTEKQKDDIRLLAIEAIKQGESLISLSKRYNIPISTLHREKLKLYEKGQLPENVNLKNRSRGEDYDDRLRNAISEILNGKSQNEIAKKYNIPKTTIWRIIKKMGGKIDTSDNPVTPKSEIVEQLLEMSKKRTVKDSHSYDDEKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250303;
- 90% Identity
- iTF_01250303;
- 80% Identity
- iTF_01250303;