Ppem004159.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010002663.1:10660-13603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.061 2.8 8.5 0.5 2 23 31 53 30 53 0.87 2 14 0.98 45 4.7 0.9 3 23 265 288 263 288 0.88 3 14 0.31 14 6.3 0.6 2 23 319 340 318 340 0.94 4 14 1.8 81 3.9 7.4 1 23 485 507 485 507 0.97 5 14 0.03 1.4 9.5 3.4 1 23 576 599 576 599 0.96 6 14 0.44 20 5.8 5.7 1 23 638 661 638 661 0.92 7 14 0.042 1.9 9.0 1.1 1 23 672 697 672 697 0.95 8 14 0.00013 0.006 16.9 1.4 1 23 703 725 703 725 0.95 9 14 0.00014 0.0066 16.8 2.1 2 23 731 752 731 752 0.97 10 14 2.7e-06 0.00012 22.2 0.7 2 23 758 779 757 779 0.97 11 14 0.0033 0.15 12.5 3.9 1 23 785 807 785 807 0.97 12 14 2.2e-05 0.001 19.4 3.2 3 23 815 835 814 835 0.98 13 14 0.0039 0.18 12.3 0.4 5 23 844 862 842 862 0.96 14 14 0.00077 0.036 14.5 1.9 2 23 870 892 869 892 0.96
Sequence Information
- Coding Sequence
- ATGCAAGACGAGGAAGATGAAACTGAATTCACTTCAGATCCACACGATATTTTCGACACTTCCAAATGGTTGCCAAATGCGAAATTATTATCTTGCGAAATTTGTAATCAAAAGTTTAGTAACAAGCTAAAAATTGTCGCTCATTGGTTTTCTAAACATCAATACAAACTATGCAGTTTCTGTACTAACTATGCCTTCAAATATGATTCAGACAAGATCCAACATGAATTACAACATTTGCCATTTGGTTGTTCAATTTGTTCATTTGAATTCAACAAAATTTGTGAAAATAACGTCAGTGAGCATTATAAGAGTGATCATCAATCTTTCTTATGTAATTACTGCTCATCAATTATACAACCTTATGAAAAATATCCTGAACACATGGAAAAGAAACACAATATTCTCAACTATACAACTTTCTCGGAACGAAATAGCATTTACGATTTTTTTGAAATTATCAATGATGGTGAAGTGAATAATTCAAATGTATTCTTCTATTGCTTCATGTGCGACAAAAAGAAACAATTGAATTTATTATTTGGTCATTTTGTCTTCTATCACAGCATTTCACTTCATTCATTTAAGAAGTCATTGGATTTATTTCATACAGAGGTCGTAATAAACGGATCAATTTTGAGTAATAGCAATATTGAAAAAAATACATCGAATGATATCGAAGAGACTGGAAATATTTTAAAAGAAACTGCATGTACAGTTTGTGAAAATCCTTTCAAATTTGACGAAATCACTAAGGAACTTCATGGAGTCTTTTGTAAAGGCAATGTTGTATGTAGTTTAAAAGATTGCTGTCAAACATTTGAATCATCTAATGAATTGAAAGAACATTTAGATTTACAACATTCATCTTTGAGTTGTAAATTTGGCTGTCCTACAAGTGAATTAAAAGCAATTGAATTAAACGATCATTTGGAGAATTTTCACGATTTAAAAGAGTGTTTTTTGTGCAATATTGTATATAGTTCTGCTACATTTAAGAATCATTTGCAAGTTAAACATAATGTGAATCTGATCATTTATGAACAAGCCATGTTGAAGGCAAATTCTAAACTTTTTCATGTGGAAGAAGAACTTCATTCAGAAGAAAGCAAGCAAGTCTTGTGCAATTTTTGTAATTACAACATTACCACAGAAATTAAGAAGTTTTCTTTCATTGACCATTATAAAAATCATCATGAAATTAGCTCAATAGCGCTTTTGCGTAATCTCGCTAAGAATCCAATTATTGATTTGATTCTTAATGAAAAGCAATCAAATTTCGATGAAGAGTGTTTGCAAAACATTATGGTCAAACTTTCATATGAAAGTTTAATTGAAGTTGATTTCGACGCATCTAAAGTGTGCTGCATTGGAATTGAACATAATTCAAATTTTAATGCTATGGAGTATAAAGAGTATGAAGGTGATGAAAATGATTTATTAGAACCATTATTTACATGTGAATTTTGCAAGAAACATTTTGGAAAAGCCTGCAAATTTTATGAACATTTGTCTTCGCATGGATTTCGATTGATGAATGTGAACACATGTGAAAAATGCAAGATTCAAAATTCAGAGACGCTTACTAATAACGTAGATAATAAAAATTTCAATTTATCTTTAGTATGTCCTTATGACATGTCGAAACATGTGACTAAAGATAATTTTACTGATCATATGATTTTTGAGCACTCTGAAAAAGCAATAATTGCCGATATCATAATTTACAAGTGTCATGTATGCAATTTTGCTTACAAAACCATGAAAGATATACGCAATCATTTTAATTCTGATCATCCGAATATTATTATGAAATATTGTCGAATTTGCCGCTATAAGCTTACACCGACCACTGAATTAGACCATTTCAAATTAAACCATGCTGAAGACTTAAAGCCGAAACATGAACGATATTGTTGTAAAATTTGTAAAAAAGAATTCAGAAAAGAAAATACTGCAAAATTACATTATTTCAAGACACATAAAAAGAAGGAAACAAAGAAAAGGCCATCATTTAAATGTCAAAATTCATCTTGCAATGAGACTTTCGAAAATAAAGAAGATCGAAAAATACATCAGTTATATATTCATCCTGATGAAAAGATGTTTTCATGCAAGCAATGTCCGATGAAGTTTACAACTAAAAGCAGTTTAAGCAGTCATAATATAATTCATAAGAATATCATTAATACTTGTAAATTTTGCCAAAAAACCTTCATACGACGCGATTCATTTAAAGAGCATCTATTAATTCATTCCGATGTTAGATTAAAATGTTCATTCTGCGAAAAAGTGTTTGTACAACGTTCAAATTTAGTTCGTCATGAAAGAATTCATCTAAATGACAAGCCATATAAATGTACATTCTGTGATAAAAAGTTCAGTGATAAGGGCGCTTGTACATCACATGAGAAGGTACATACGAAGACAGAACATGCTGATTGTACAGTTTGTGGAAAACATTTTGCAAGGAAACAAAAATTGAAGTATCACATGCGATTGCATACTATGGAAAACGTGCTAACTTGCGAATGTGGCAAAGTTTTTCCTGAATCATATTCGTATCGTAAGCACCGAGAAAGTCATTTAAATAAAAATGAAAGTACCCGATGCAACTTTTGTGGTGAAACCTTCAAATCGAAGAAGGCAAGAATGAGGCATGAACAAACAGAACATAGCAATAATTCTACAAGTGACAATGATGTCAAAAGTAAAATTGAAAAAGACAATTGTTCTATTAATTTCGTTGACGATCATCCTTAA
- Protein Sequence
- MQDEEDETEFTSDPHDIFDTSKWLPNAKLLSCEICNQKFSNKLKIVAHWFSKHQYKLCSFCTNYAFKYDSDKIQHELQHLPFGCSICSFEFNKICENNVSEHYKSDHQSFLCNYCSSIIQPYEKYPEHMEKKHNILNYTTFSERNSIYDFFEIINDGEVNNSNVFFYCFMCDKKKQLNLLFGHFVFYHSISLHSFKKSLDLFHTEVVINGSILSNSNIEKNTSNDIEETGNILKETACTVCENPFKFDEITKELHGVFCKGNVVCSLKDCCQTFESSNELKEHLDLQHSSLSCKFGCPTSELKAIELNDHLENFHDLKECFLCNIVYSSATFKNHLQVKHNVNLIIYEQAMLKANSKLFHVEEELHSEESKQVLCNFCNYNITTEIKKFSFIDHYKNHHEISSIALLRNLAKNPIIDLILNEKQSNFDEECLQNIMVKLSYESLIEVDFDASKVCCIGIEHNSNFNAMEYKEYEGDENDLLEPLFTCEFCKKHFGKACKFYEHLSSHGFRLMNVNTCEKCKIQNSETLTNNVDNKNFNLSLVCPYDMSKHVTKDNFTDHMIFEHSEKAIIADIIIYKCHVCNFAYKTMKDIRNHFNSDHPNIIMKYCRICRYKLTPTTELDHFKLNHAEDLKPKHERYCCKICKKEFRKENTAKLHYFKTHKKKETKKRPSFKCQNSSCNETFENKEDRKIHQLYIHPDEKMFSCKQCPMKFTTKSSLSSHNIIHKNIINTCKFCQKTFIRRDSFKEHLLIHSDVRLKCSFCEKVFVQRSNLVRHERIHLNDKPYKCTFCDKKFSDKGACTSHEKVHTKTEHADCTVCGKHFARKQKLKYHMRLHTMENVLTCECGKVFPESYSYRKHRESHLNKNESTRCNFCGETFKSKKARMRHEQTEHSNNSTSDNDVKSKIEKDNCSINFVDDHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250561;
- 90% Identity
- -
- 80% Identity
- -