Ppem001254.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010004243.1:1668-4466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.75 35 5.1 0.2 5 19 59 73 58 76 0.90 2 11 0.0011 0.051 14.0 1.6 1 23 160 183 160 183 0.96 3 11 3.8 1.7e+02 2.9 6.1 1 23 189 212 189 212 0.95 4 11 0.00027 0.012 15.9 2.4 3 23 222 242 221 242 0.97 5 11 0.0023 0.11 13.0 0.8 2 23 248 269 247 269 0.94 6 11 3.1 1.4e+02 3.2 0.6 3 23 285 304 284 304 0.90 7 11 4.8e-05 0.0022 18.3 0.8 1 23 312 336 312 336 0.98 8 11 8.5e-05 0.0039 17.5 2.0 1 23 342 364 342 364 0.98 9 11 6.4e-05 0.0029 17.9 5.4 1 23 370 393 370 393 0.97 10 11 0.039 1.8 9.1 0.5 1 23 403 428 403 428 0.92 11 11 0.0013 0.058 13.8 3.5 2 23 437 459 436 459 0.97
Sequence Information
- Coding Sequence
- ATGAACTCAAGTGAAAAAGAAAAAAATCAAATTGAAATATTAAATTTTATTGAAGAAACAATTCAATGTTGTTTGCTGTGTTGTGATGTTAGAAAATTGTTGAATTTATTAATTGATCATATAAAAGAATTTCATAACAAAGATTTAAATTTATCAAAAAAAGTGCAATTATGCAACTGTCCTGAAATCTTTTCAACAAAATCTCAAATTCTTAATCATTTTTTAAATTTATCAATTTTAAAATCGAATGAAGAACAAAAAGATCATTTGGAAGTGCCAACAACTGAAGAAATTTCGTTTGAAGACTTTAAAAGTGAAAAATCAGAAGCATTTGACAATGAAATTTTAAATTCTTCAAAATCCTCAAAACGTGGACGAAAACCAAAAAGTTTGAATTTTCCAAAACCAATTGAGAAAATTAAAAGTGAAAATTTTCTTCCGCCAATTCGTCATTCACAATTTCTTACGCAACCTGAATTTGCTTGTGATTTTTGTCCTAAAATTTTGTACACTCGAAGTGGCTTAAATAAACATCACAACTCAATGCACAATCCTGAAAATCATTTCAAATGTTCAAAATGTTCTGTTGGTCATTGCAATACATTAAAAAATCTTCATGCTCACTTGAGAGTTCATGGTGATGTTCAACTGTCATTAAAAATTTGTGAAAAATGCAATAAACAATTTGACACTGAAAAGCAACTTTATCATCACATGCTGCTGCACAGAGAAAAATTTTTAGAATGTGATCATTGTGGGATGAAATTCAACATGAAGCAGCCACTGTTAAAGCACATTTTTGCTCATTTTGATATTCGACAGCCAAAATATGAAAATGTTACAAAAAGTTTATGTGAAATTTGCAGCAAATTAGTTGTATCGTCAAGAATGAAAAGACATTTAAGCACGCATTTCAATGACACAAAAGCAAGCTACAAATGTGAATTTCCTGACTGTTTAAAAACTTTTACTGAGCTTAGAAACTTGCAAGATCATCAAAATATGCACAAAAATTTGAAGCCTTATGTTTGTGAGTTTTGCAACATGGCTTTTAGACATCGAGTTGCATTGAGACAGCATAGATTAAGACACACAGAGCCAGAAAAGCATAAATGTGAAATTTGCCTTGAATGTTTTGTGACAAATCAAAGTTTAAGAAAACACATGAAAAGACAGCATCAGGATAGAAAAATTGATGTGAGACCTTTTGCTTGTGATTATGATGGATGTAATTCAACTTTTAAATATGAAGACTTTTTAGTGAGACATAAAAAAGAAGTTCATAATCCAAAACTTCAAGAAGAAAAGAAATGTGATTTTTGCAACTACACAGCCAAAAATTCTAAAAATTATTTTCAACACATGAGAAGGTCTCATAATATAAAGAAAAGAATCAACAATCGTGTTTTCCCTCTAAGTTCTACTGCAGTTAATATAACAGAAAAAATAAATGAATAA
- Protein Sequence
- MNSSEKEKNQIEILNFIEETIQCCLLCCDVRKLLNLLIDHIKEFHNKDLNLSKKVQLCNCPEIFSTKSQILNHFLNLSILKSNEEQKDHLEVPTTEEISFEDFKSEKSEAFDNEILNSSKSSKRGRKPKSLNFPKPIEKIKSENFLPPIRHSQFLTQPEFACDFCPKILYTRSGLNKHHNSMHNPENHFKCSKCSVGHCNTLKNLHAHLRVHGDVQLSLKICEKCNKQFDTEKQLYHHMLLHREKFLECDHCGMKFNMKQPLLKHIFAHFDIRQPKYENVTKSLCEICSKLVVSSRMKRHLSTHFNDTKASYKCEFPDCLKTFTELRNLQDHQNMHKNLKPYVCEFCNMAFRHRVALRQHRLRHTEPEKHKCEICLECFVTNQSLRKHMKRQHQDRKIDVRPFACDYDGCNSTFKYEDFLVRHKKEVHNPKLQEEKKCDFCNYTAKNSKNYFQHMRRSHNIKKRINNRVFPLSSTAVNITEKINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -