Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010003094.1:18946-20987[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0031 0.14 12.6 0.2 3 19 205 221 204 221 0.97

2 11 1.5 67 4.2 0.8 1 15 233 246 233 252 0.74

3 11 1.6e-06 7.6e-05 22.9 1.4 3 23 257 278 255 278 0.95

4 11 7.4e-05 0.0034 17.7 0.2 1 23 335 357 335 357 0.97

5 11 0.0043 0.2 12.2 0.3 1 20 363 382 363 384 0.92

6 11 0.16 7.2 7.2 1.6 1 23 459 481 459 481 0.97

7 11 8.3e-06 0.00038 20.7 3.7 1 23 487 509 487 509 0.97

8 11 7.5e-06 0.00035 20.8 1.3 1 23 516 538 516 538 0.99

9 11 3.8e-05 0.0018 18.6 0.5 3 23 544 565 542 565 0.95

10 11 0.00028 0.013 15.9 1.2 1 23 568 590 568 590 0.97

11 11 0.09 4.2 8.0 1.3 1 23 598 620 598 620 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0031	0.14	12.6	0.2	3	19	205	221	204	221	0.97
2	11	1.5	67	4.2	0.8	1	15	233	246	233	252	0.74
3	11	1.6e-06	7.6e-05	22.9	1.4	3	23	257	278	255	278	0.95
4	11	7.4e-05	0.0034	17.7	0.2	1	23	335	357	335	357	0.97
5	11	0.0043	0.2	12.2	0.3	1	20	363	382	363	384	0.92
6	11	0.16	7.2	7.2	1.6	1	23	459	481	459	481	0.97
7	11	8.3e-06	0.00038	20.7	3.7	1	23	487	509	487	509	0.97
8	11	7.5e-06	0.00035	20.8	1.3	1	23	516	538	516	538	0.99
9	11	3.8e-05	0.0018	18.6	0.5	3	23	544	565	542	565	0.95
10	11	0.00028	0.013	15.9	1.2	1	23	568	590	568	590	0.97
11	11	0.09	4.2	8.0	1.3	1	23	598	620	598	620	0.90

Sequence Information

Coding Sequence: ATGAATAAAACCAAAATTACTACATCAAAAGCGAGTGTACTGATACTAGAAAATAGAAGCGGAGAGGTATTTATTGTGGAAAGTCAAGAAAAGCAGGAAGAAGTAAGAAAAAGTGCCAAAAATGCTCTCGTCAAAAATCAAAACAACAAAAACCCTGAAATCAAACAACAGCTTCAATTTATTGAGAACAACTCAGATATAAAAGATGAACAAGAATGCATTACTGATGATTTAATTGTCGAAGAATATCTTGATGAATATTTCACAGAAAGCACTGAAGATCAAGATTTTGAAGAACTTCCTTTTATTTCTGTCGATACTTCTAAATTATCTCTTAAAGCAGAAGAAAAACCAAAAAGCTCAGCTATTCTGGATCATCAATACACAGTAACTGAAATTTACGAAGAACACACTACTGAAGTGGAAGTTACTGAAATAACAGAGTTTGATAATGAAAATGCGGAAGTGTATACATATGAAGAACTGCCATTAAATGATGAAACCTGTAATAACATCACATCTGAAATAGAAATAGAGAGTTTCGATGAGGATGGAAAGAAAATTTCAAAGAAGCAATATCACAAATTTCACCAATTAACTGGCAAAGCGGCATGCAAGTACTGTGAAACTGTATTCAAGTCAAAAGAAATGCTTAAAATGCATGATTGCAAGTACCTTCAATGCGATCCAAAAAATTTTATTTGTCGCATTTGCAACAAAGAACTGAGCCGAAAAACATTTTCAAATCACCTTCATGAAACAACAAACTGTCAATACTGTAATAAAAGCTTTGTAAATCCTCGAAATTTGAAGACACATATTAAGAATTTACACAAAGATGAAGGATTTATTCCACCAAAATCACCAGATAAATCTTATTACAAAGAACTTGAAATTGATGAAACTGAAAAATCACAAGTCCGTCTTGATGAAGAGACTGGACTCATTACAACATCTGTTGAGGAAAAAGAAAAGAAAAAGTATGTACGCAAAAAAGGACGCTTTGAATGTGAGTTGTGCGGGAGAATCTTTTCGCTTGCAAGATCTTTAACTCAGCATCTTCTTCTACATTCTAAAACTTATCGTTATATTTGTGAAACTTGTGGAGAAAAATTTACTACTAGAACTGGAATCATTAAACACGCTTGTCTTAATCGAAAGAGAAGGCGACCAGAAAAAGATTTTCGCACAGTGGATGTACGTCATTGTAAATATTGTGATTTGTGGTTTGATTCACTTGAAGAAAATAAGAATCATGATTGCGACTATCAAATGGGCTATGATCCAAAAATGTTTAAATGCCGTTTTTGTTTTCTTGAGATGTCTAAAAATTCATATAATAAGCATATGTCAAAACATTTAGATCCAAATGAATATGTTTGTAAATTATGTGACAAAAAACTTGTTTGTGAAAAGGCACTTCTGACCCATTTGACCACTCATTCAGGAAATAAACCATTTCAGTGTGAACATTGCGATAAAAGTTTTATTAACAAGACACTACTTGTTCGACATTCACGTTTTCATGGAATTGATGTGCCTACATATAGATGCGAAGTTTGTGACAGAGAAGTTGCGTCAAAATATCACTTGAAAACTCACATGTTGATGCATAAAGAAGAAGTCATTTGCCAAATATGCAAGAAGGAATTTAGCAGTCGTGATAAATTAAAGGAACATTACCAAGTCGATCATGAGCCCTATCGCTGCAGCGTTTGTACGAAGACTTTTGTATTGCCTCGATATCTTAAAATGCATGAAAAACTTCATAAAGGAAACTCGACGCGCCAATTTGCTTGCGAGTTCTGCTCGAGAGAATTCAGTAAACGATCATTAGCTAATCATGTTTTTAAGAATCATCAAGAAAATTTCAATGAATGGCGAGACAAAAATATGGATTTTATTACATACAATTCGTGA
Protein Sequence: MNKTKITTSKASVLILENRSGEVFIVESQEKQEEVRKSAKNALVKNQNNKNPEIKQQLQFIENNSDIKDEQECITDDLIVEEYLDEYFTESTEDQDFEELPFISVDTSKLSLKAEEKPKSSAILDHQYTVTEIYEEHTTEVEVTEITEFDNENAEVYTYEELPLNDETCNNITSEIEIESFDEDGKKISKKQYHKFHQLTGKAACKYCETVFKSKEMLKMHDCKYLQCDPKNFICRICNKELSRKTFSNHLHETTNCQYCNKSFVNPRNLKTHIKNLHKDEGFIPPKSPDKSYYKELEIDETEKSQVRLDEETGLITTSVEEKEKKKYVRKKGRFECELCGRIFSLARSLTQHLLLHSKTYRYICETCGEKFTTRTGIIKHACLNRKRRRPEKDFRTVDVRHCKYCDLWFDSLEENKNHDCDYQMGYDPKMFKCRFCFLEMSKNSYNKHMSKHLDPNEYVCKLCDKKLVCEKALLTHLTTHSGNKPFQCEHCDKSFINKTLLVRHSRFHGIDVPTYRCEVCDREVASKYHLKTHMLMHKEEVICQICKKEFSSRDKLKEHYQVDHEPYRCSVCTKTFVLPRYLKMHEKLHKGNSTRQFACEFCSREFSKRSLANHVFKNHQENFNEWRDKNMDFITYNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250430;
90% Identity: iTF_01250430;
80% Identity: -