Ppem010141.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- ZBTB41
- Assembly
- GCA_014622435.1
- Location
- JACWBX010000467.1:1-2617[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.63 10.6 0.3 2 22 168 188 167 188 0.95 2 12 0.0011 0.05 14.0 1.3 1 23 197 220 197 220 0.97 3 12 0.0011 0.052 14.0 0.1 2 23 227 249 226 249 0.94 4 12 2e-05 0.00095 19.5 2.3 1 23 255 277 255 277 0.98 5 12 0.00012 0.0055 17.1 3.0 1 21 295 315 295 316 0.95 6 12 0.063 2.9 8.5 3.8 1 22 330 351 330 353 0.86 7 12 4.3 2e+02 2.7 0.7 3 23 364 381 363 381 0.77 8 12 2 94 3.7 1.8 1 19 385 403 385 408 0.70 9 12 3.2e-05 0.0015 18.8 2.6 1 23 418 441 418 441 0.96 10 12 1.3e-07 6.1e-06 26.4 1.3 1 23 448 470 448 470 0.99 11 12 3.6e-05 0.0017 18.7 0.7 1 21 477 497 477 500 0.90 12 12 0.016 0.75 10.3 0.5 1 23 506 531 506 531 0.94
Sequence Information
- Coding Sequence
- ATACAATTAAAATCGAACACAATCACAAAATCATCTCGAATTTGTATCAAACATTTCACACCAGAAGATATTGACAATAATTTTAGAAACATTCTCAAACCAAATGCAATTCCACAATCAAAAGTTTCATCTTCACAACAAATTCTAATTTCTAATCCGGTTGAAATTGATTTTGAACCACTTTGTCATGAAATAAAAGAGAAATTTCTAAATTTGAGAATTTTTAATGATTTAAATGGAATTTGTGTTTATAAAATGAAATTTAATGATGAAATTAGTGATGTGATAATAAAAACAAGAATAATTGTAAATAAAGAAATGAAAATTAAAGTGATAAATAATGAAATTGAAGAAATTTGTTGTGAACTTCAATCATTGTCGCATTTAATTGAAATAATTGAAAAATATTTTCAAGAAGAAATTTTGAAATCTCAAAGCGAGGAAAATTTAATTGAAGAATATTTTGAGGATGACATGATAATCGAATATATTGATCCATTAAAATGTGAAAACTGTTCTATAATTTTCAAAAATCAACTTGGTCTTGATCATCATATAAAAACTTGCAAGAATCCTAAAGTTATCGACTTCAGCTGTTCAGTTTGCAACGAAAACTTCCAATCAATTTTTCAACTTAAAATTCATCAAAATAAGAATCATGCGAGTATCAATAAAGTTAAATGTCAACTTTGTAATTTGACTTTAACTAGTGCAGCAAGTTTGAATAGACATTTAAATGCTGTTCATTTGATGATAAAGAATCATAAATGTTCAATCTGCAATAAATCTTTTGCAACAGCTTCAACAAGAAATGCACATGAAAAAACACACGAGAAGAATTCAGAAATGGAACAATTTTTAAACAAAGAAGAAAAAAGCCTTTATTGCTGTCCATATTGTGATGAAAAATTTATTTTCTCTCACCAACTTCAAAGTCATATGGAGAAAAATTGTTATCAACCACCAAAAAAGCGAAGACTTTATAAATATCCTTGTAAATTTTGTGACAAACAATTTACAACAAAAATTAAAGCTGCAAGTCATTATTTTGAATGTCACAATGTTAAAATTGAAAACCCACAAAAATTCTGCTTTGAATGTAATTTGGAATTTGAAGATTATTCAAATCATATCAGAATTCACACTTGTCAATATAGTTGCGGCTATTGTGGACTGAAATTTCTCAGTGAAGAAACATGTAATCAACATGAAATCACAAAACATCCTGAACCAAATTCAGAAATTCGTCCTTTTCCTTGTGATTATTGCACAGCTTCTTTTAAGACTGAATATCATTTGAAATCTCACATTTCATCATTTCATGAGTTTAATGAAAAAGAATTTGAATGCGAAATCTGCAAAAATCGTTTTTCAACTCGTTCATCATTGAATGCTCACATGAGAACTCATGACAAAAATTTATCAATTTTCACATGCAAAATTTGTGGGAAAAATTTTAGAAAATTGTTAAATTTGAAAAATCACTCAATTGCAATTCATCAAATTGAAGAAATTTATTTCTGTGAAATTGAAAATTGTGAAGAGAAATTTAAATTGTTGCAGGAATTGAAAAATCATCAACAAAATGATCATGGTGTGAATTTAAATATTCAAAAATATTTTTCTTATGAAAGGGAATAA
- Protein Sequence
- IQLKSNTITKSSRICIKHFTPEDIDNNFRNILKPNAIPQSKVSSSQQILISNPVEIDFEPLCHEIKEKFLNLRIFNDLNGICVYKMKFNDEISDVIIKTRIIVNKEMKIKVINNEIEEICCELQSLSHLIEIIEKYFQEEILKSQSEENLIEEYFEDDMIIEYIDPLKCENCSIIFKNQLGLDHHIKTCKNPKVIDFSCSVCNENFQSIFQLKIHQNKNHASINKVKCQLCNLTLTSAASLNRHLNAVHLMIKNHKCSICNKSFATASTRNAHEKTHEKNSEMEQFLNKEEKSLYCCPYCDEKFIFSHQLQSHMEKNCYQPPKKRRLYKYPCKFCDKQFTTKIKAASHYFECHNVKIENPQKFCFECNLEFEDYSNHIRIHTCQYSCGYCGLKFLSEETCNQHEITKHPEPNSEIRPFPCDYCTASFKTEYHLKSHISSFHEFNEKEFECEICKNRFSTRSSLNAHMRTHDKNLSIFTCKICGKNFRKLLNLKNHSIAIHQIEEIYFCEIENCEEKFKLLQELKNHQQNDHGVNLNIQKYFSYERE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250132; iTF_01250407;
- 90% Identity
- -
- 80% Identity
- -