Ppem007794.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010000763.1:3471-4544[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0014 0.064 13.7 2.3 2 23 41 63 40 63 0.95 2 11 0.00078 0.036 14.5 2.0 1 23 72 95 72 95 0.97 3 11 0.044 2 9.0 0.5 7 21 109 123 103 125 0.87 4 11 0.075 3.5 8.2 1.4 2 23 131 150 130 150 0.93 5 11 3.8e-06 0.00018 21.8 4.3 2 23 158 179 157 179 0.97 6 11 2.8e-05 0.0013 19.0 1.8 1 23 183 205 183 205 0.98 7 11 6.9e-07 3.2e-05 24.1 6.3 1 23 211 233 211 233 0.99 8 11 0.0017 0.078 13.4 6.0 1 23 241 263 241 263 0.98 9 11 0.00018 0.0084 16.5 5.6 1 23 271 293 271 293 0.98 10 11 0.00099 0.046 14.2 3.0 1 23 300 323 300 323 0.97 11 11 0.0014 0.067 13.6 1.0 2 23 332 354 331 354 0.94
Sequence Information
- Coding Sequence
- ATGAATCAAGAATTAAATATAAAAGTAGAAAAAGAGCGTGAATTTATTTTAGTCATTGACAACAGTGAACAAGTGAGACCAAAAATTGAAAAAGAGAAAAATGAAAACAAAGACGAAAAAGTTTGTAAGATTTGTGATAAAAAATTGTCAAGTAAAATAAGTTTGCATCAACATGAGAAGGTATTTCATTCAAGTGATTTAGGTTTAAAAGTTTATTTTTGTGACAATTGTGATTTAAAATTTTTCAACAAAAACTTTTTGATTGCTCATTTAAAATCAAAACATCAAAAAGGAAAAGAAATCAAATTTGAATGCGATTTTGATGGAAAAATTTTTGTAACTAAAAAACAACTTACGAGTCATATGAAATGTCATTGTAGTGCTAAGAAAAAATGTAAAATTTGTCAGGAAGAATACAAAAATTTGAATCAACACATGAGACAAGTTCATCCATCAAATAATGAGAAAGTTCAATGTAAAATCTGCAATAAATCATTCAAGAATCAACAGTGTTTGAAAATTCATCTTAAATCACACAACAAACAGCACCAATGTCGAGTTTGTGGACGTAAATTTGCATCAATTTATTATTTAAAAGAACATTTAAAAGTTCATGAAGATCGTTTTACATTTCGATGTGAAAAATGTCAGAAAAATTTTAATCATTCGTCAAATTTGAGAAATCATCAAAAAACTCATGAACAAAATCGATCAAAGCCACACAAATGTCAACAATGTGATTATGCTAGTGATAAGAAAGAACATTTTACAAATCATCTTAGAACTCATGATAAAAACCGAGAAAAAAACTTTAAATGTTCAAAATGTGATTTCAAAACTGATCACAAAAGAAATCTTAAGCGACATCTTCAGATTCATGAACCAAATCGAAGAAAATTTCCATGTTTGTATTGTAATTATGAAGCAAATCAAAGAAGCCATTTGACAACACATCTTAAACGAAAACATGATCCAAACAGAGTCAAAAATCTCAAATGTTTTCGTTGTGATTATGCTACAAATTTAAAAGATAATTTGAACAAACATATTAAAGCAAGACACAACAAAAAGTAA
- Protein Sequence
- MNQELNIKVEKEREFILVIDNSEQVRPKIEKEKNENKDEKVCKICDKKLSSKISLHQHEKVFHSSDLGLKVYFCDNCDLKFFNKNFLIAHLKSKHQKGKEIKFECDFDGKIFVTKKQLTSHMKCHCSAKKKCKICQEEYKNLNQHMRQVHPSNNEKVQCKICNKSFKNQQCLKIHLKSHNKQHQCRVCGRKFASIYYLKEHLKVHEDRFTFRCEKCQKNFNHSSNLRNHQKTHEQNRSKPHKCQQCDYASDKKEHFTNHLRTHDKNREKNFKCSKCDFKTDHKRNLKRHLQIHEPNRRKFPCLYCNYEANQRSHLTTHLKRKHDPNRVKNLKCFRCDYATNLKDNLNKHIKARHNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -