Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010001494.1:8046-10691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00021 0.0098 16.3 0.0 1 20 14 33 14 35 0.93

2 14 0.059 2.7 8.6 1.2 1 23 43 66 43 66 0.97

3 14 1.5e-07 7.1e-06 26.2 1.3 1 23 72 94 72 94 0.98

4 14 0.00033 0.015 15.6 0.7 1 23 100 122 100 122 0.95

5 14 0.027 1.2 9.7 0.8 1 21 128 148 128 149 0.94

6 14 0.73 34 5.1 0.7 1 13 329 341 329 352 0.78

7 14 0.48 22 5.7 0.3 2 23 377 398 376 398 0.92

8 14 5.1 2.4e+02 2.5 2.3 1 23 406 429 406 429 0.92

9 14 0.0041 0.19 12.2 1.3 3 23 435 458 433 458 0.92

10 14 0.00027 0.013 15.9 0.1 1 21 470 490 470 491 0.94

11 14 0.00011 0.0049 17.2 2.2 1 23 499 521 499 521 0.98

12 14 1.3e-05 0.00061 20.1 3.2 1 23 527 549 527 549 0.98

13 14 0.04 1.9 9.1 2.1 1 23 555 579 555 579 0.97

14 14 0.035 1.6 9.3 0.9 1 22 585 606 585 606 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00021	0.0098	16.3	0.0	1	20	14	33	14	35	0.93
2	14	0.059	2.7	8.6	1.2	1	23	43	66	43	66	0.97
3	14	1.5e-07	7.1e-06	26.2	1.3	1	23	72	94	72	94	0.98
4	14	0.00033	0.015	15.6	0.7	1	23	100	122	100	122	0.95
5	14	0.027	1.2	9.7	0.8	1	21	128	148	128	149	0.94
6	14	0.73	34	5.1	0.7	1	13	329	341	329	352	0.78
7	14	0.48	22	5.7	0.3	2	23	377	398	376	398	0.92
8	14	5.1	2.4e+02	2.5	2.3	1	23	406	429	406	429	0.92
9	14	0.0041	0.19	12.2	1.3	3	23	435	458	433	458	0.92
10	14	0.00027	0.013	15.9	0.1	1	21	470	490	470	491	0.94
11	14	0.00011	0.0049	17.2	2.2	1	23	499	521	499	521	0.98
12	14	1.3e-05	0.00061	20.1	3.2	1	23	527	549	527	549	0.98
13	14	0.04	1.9	9.1	2.1	1	23	555	579	555	579	0.97
14	14	0.035	1.6	9.3	0.9	1	22	585	606	585	606	0.96

Sequence Information

Coding Sequence: ATGCCGAAAAATAAACTAAATAATGAAGATAAAAAGAAATTTATTTGTCAAGATTGTGGAATTTCACTTAGTTCATCATATAATCTTAAAGTTCATGTAGAAAGCAAATGTTCAACAGAGAAAAAATTTGTCTGTGACGTTTGTCAATCAAGATTCCTTACAATTCATTCACTTAAGACTCACATAAATTCAATTCATAATACAGAAAAGAAATTCGTATGCAGTCATTGTGGAAAATCATTTGCATCAAAAGGTCAATTAACAGTCCATGAACGAAGTCACACTAAGCACAAACCATTCATTTGTGGTGTTTGCAATCGAGCATTTAGTCATCGTGAAAGTCTTGTGACACACAGTACAGTTCATACAAAAATTAAACCTTACATTTGTGAAAATTGTCAACAAACTTTTTCTTGTGTTGGAAATCTCATAAAACATAGAAAAATTCGACCAACAACTTGTGGTTTACCAATTTTTACAAATAAAAAGATTTGCAAACGAGCTGGTGTGAAATGCGAGAAAGGAAAACCAAGTATAATTGTAGTGGATTCAACACCAATTGTCGAAGAACAACAACAACATGAAGAACTTGAACCACAGCAGACAGTGACTTATTCAGATCATCAATATATTTCAATTTTAGTTGAAAATCAAAATGCGCAGGAAAGCATAATTGAAGATTTTTCAAAAAAAGAAATGGATGTTTTTGATTATATTGGAATTGAAATTCGAAACATGCAAGAACAAGAAGAGCGTGAAAAGCAACAGCAATTGTTAAAAGAGCAGGAAGTTCAAGAACAAGAATTTATGGTGATAAATGAAGAAGAGCATGAAAATGAAGAACATGTTGAATACATTGATGAGCAACTAGAAAATGATGAAGTTCTATGTGAAGAATTCATCATTGATCAACAATCAGAAGATAGTTCACAAACAGCTGAAACTGAAGAACTTGAACATCTCGACACAAGCATTGAAGGTGTCTTTAAATGCAAACTATGTCCTAAAATTTATCAAAAGAAAAATATCAGCATAAATCATCTAAAAAAAGAACACAAAATCATAATCAAAACTTTTAATTATGACACAACAAATCGTTATAGAAAACCACAAAAGAGTCCAAAATGGAAATGCAGATTTTGTCCTAAGAAATATATAAGTGCAAAAATAGTTGAAAGACATGAACAAGTTCATGGGAGCAATGGTGAATTGATTTTTAAATGTCCTTGCTGTGCTTTACATTTTTCATCATTTGAGGAAGTTGAAAGTCATCAATATGAAGCTCACGCTAATAGATTAATTTGTGATATTGAGGACTGCAAAAAGAAATTTGATCATCCTGATAAATTATTAAGTCATAAAAAATATTCACATTTAAATAGAAAGCAGCAGATGAAAAAATATATTTTCGTGTGCACGCTTTGTGGACGAAACTTTAACACAAAAGTAGCTCTATCAGATCACGAACGTAGTAATTGTGGTAAAAATCCAATCTATCGATGTCAATATTGTGACAAATTTTATCATTCAGCCGGTAGTCTAAAAGTTCATCTAACAATTCATACAGCTGAATTAAATTTTGAATGTACTTTTTGTCAAAAGAAATTTAGAACGAAAGGACAATTGACAGTTCACAATCGCAGTCATTTGAATATAAAACCTTTTAAATGCACTTTTGAAAATTGCACAGCTGAATTTGCTCATCGACAGAGTTTGGAAACTCATAAATCAATTCACACTGGAATAAAAAAATATGAATGTGAAAAATGTTCTGCTCGATTTTCTTGTATTTCAAATCTTTTGGCTCATAGAAGAAGTCGAAAAAAAGATTGTGGAGAAGTTAATAAAAGTGAAACTGAAAGTTTGGTGTAA
Protein Sequence: MPKNKLNNEDKKKFICQDCGISLSSSYNLKVHVESKCSTEKKFVCDVCQSRFLTIHSLKTHINSIHNTEKKFVCSHCGKSFASKGQLTVHERSHTKHKPFICGVCNRAFSHRESLVTHSTVHTKIKPYICENCQQTFSCVGNLIKHRKIRPTTCGLPIFTNKKICKRAGVKCEKGKPSIIVVDSTPIVEEQQQHEELEPQQTVTYSDHQYISILVENQNAQESIIEDFSKKEMDVFDYIGIEIRNMQEQEEREKQQQLLKEQEVQEQEFMVINEEEHENEEHVEYIDEQLENDEVLCEEFIIDQQSEDSSQTAETEELEHLDTSIEGVFKCKLCPKIYQKKNISINHLKKEHKIIIKTFNYDTTNRYRKPQKSPKWKCRFCPKKYISAKIVERHEQVHGSNGELIFKCPCCALHFSSFEEVESHQYEAHANRLICDIEDCKKKFDHPDKLLSHKKYSHLNRKQQMKKYIFVCTLCGRNFNTKVALSDHERSNCGKNPIYRCQYCDKFYHSAGSLKVHLTIHTAELNFECTFCQKKFRTKGQLTVHNRSHLNIKPFKCTFENCTAEFAHRQSLETHKSIHTGIKKYECEKCSARFSCISNLLAHRRSRKKDCGEVNKSETESLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -