Ppem007643.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010004316.1:22430-24850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 2.4e+02 2.5 0.2 2 11 54 63 54 68 0.88 2 15 0.016 0.72 10.4 0.1 2 23 100 121 100 121 0.97 3 15 3.9e-05 0.0018 18.6 2.1 2 23 126 147 125 147 0.97 4 15 0.00045 0.021 15.2 2.8 1 23 151 173 151 173 0.97 5 15 0.00012 0.0057 17.0 0.9 1 23 200 223 200 223 0.96 6 15 0.00054 0.025 15.0 2.3 1 23 230 252 230 252 0.98 7 15 5.8 2.7e+02 2.3 1.4 3 23 260 283 258 283 0.92 8 15 3.2e-05 0.0015 18.9 3.5 1 21 290 310 290 311 0.96 9 15 0.00057 0.026 14.9 2.7 1 23 520 543 520 543 0.94 10 15 2.3e-05 0.0011 19.3 4.0 1 23 549 571 549 571 0.97 11 15 2.4 1.1e+02 3.5 0.5 2 10 576 584 575 595 0.75 12 15 0.002 0.093 13.2 1.1 1 23 604 626 604 626 0.95 13 15 0.00013 0.0061 16.9 0.7 1 23 630 653 630 653 0.95 14 15 0.00022 0.01 16.2 2.4 3 23 663 685 662 685 0.95 15 15 9.4e-05 0.0043 17.4 0.9 2 23 692 714 691 714 0.94
Sequence Information
- Coding Sequence
- ATGGAAACCAACAGGGAAAAAAATTTAATTTTGAATCAAGATAAAAATAATTTAAAAGAATCATGTTATTTGTGTGGGAAAAATTCTGAAAGATTAGCAGAAAAACGATATGGGAGTTGTAAAGAATGTAAAGAACGGAAACAGAGATGTAGAGAGAGAAAATGTCGCAGATGTGGTAAAAAATACACAGCTATACTACTTAAAGAAAACAATCCATCAACTAGAAATTGTGATGATTGTTTTAAAAACAAAAAAAAGATAAAAGGCATTAATTCAAGACCTTCAATAAATTTTGCTCAATGCGATCTTTGTGGTGCAACTTTTGATAAAAAGATTCTCATTTATGTTCACATGGAAAAACATAGAGGAGATACCACATGTCGTGTTTGTAATGCTTCCTTTTCACGGAGGAATACTCTTCGTATGCACTTACGTACACATTTTGAAAATTTCATTTGTGAACAGTGTGGATATTCTACAACTAACAAGATTACATTCAGACATCACATAAAACTACATACTGAAATCAATGTCAATGGCAAAAATACTCAAAAATCCACCTATGTGAAAGGTAAATATCCTGCGGTTCGAGGAAACTTTCCATGCTCTCATTGTGGCTTAGTTTTTGTAACAAAGACAACATTAATTGGTCACGAGAAGAGACAGCATGAGAATGGAAATAAAGGATTTACATGTAAAGATTGTAAAATAACCATTTTTCGACAAAAGGAATTTCGTGAACATATGATGACTCATTCTAATAAACCTCTCCTTTTTTGTCACTATCCTAATTGCGATTATTATTACAACACAATAAAACGGATGAATATGCATATAAAATATGTACATGAAACAAAAGATGATAGTTATGAATGCCAAAATTGCAAGAAAACATTTAAGCATAGAATGTCATTAGAAAAACATCAGAGAAATAATAGATGTATACCGTTAAGTGTTAGGAAGTTAAATGGAGCAAAGAAAAATGTATCAAAAAGCACAAAATATTTTGAAAACAAAACGGCAGAAGAGTTGGAGAGAAACGCAAAAATAGCCAAACAGCAGTATTTAGAAATAAGAGGATTAAGTAAAATTATTGAAAAAGAGAATGAAGAAAAGAACGATGATATCTTTAAGGAAGATAAGAATCAAATAAAATTAGTATTTCCTAAAATCGAATCAATATCTGATAATGATGACAGCGCATCGTTGCACGAAAACGAATATTTTGAACAGGATACAAAGAGTAACAATGCTTTAGATAACACAAATATTCAACCGTTTCTTAAAATTGAAATAAAATCTGAGCCAGTTGATAATGGATCAATTGTTATCGAAAATATTTATAACGAAAAAGTTTCAAATATGTGCACCAACATTATACCAATAAATAATCGTTATCCACTCGTCCACCTTGAAAGACTTGATAATGCTATGCTCCAAAGCATTTCAAAAATTAAAAAAGAAGAGAAGGATGATCTTGATTTTTCATTGAATATAAGTCCAGAGAAAAAACAGATTAAGGTTCACATAAAGTTTGTACATTTATCAACAATAGATTATTCATGTCCGCATTGTCCATCAAAATATAAAACTAAAAATTTTCTCAAGAGACATATAGAAGAATCTCACATTGGAATTAAAAGATTTAGCTGCCAGTTTTGTGGAAAAGAATTTAAAAGAAAAGAACACTTACAAGATCACGAAAGTCGACATGCTGAACCAGTGACATGTCACATTTGTGGTAAGCTGGTTAAAAAGTTGGAACAGCATGTAAAAAATATTCATAAAGAAAAAAGAGAATTTAAAACATTTCCATGTTCATACTGTGGCAAGTTTTTCAATAAATATATTCTCAAGTCGCACATTAATAATGTTCATAATAAATTACATGTTTGCCTTAAATGTGGAGAAAATTTTACAACACCAACAGATTTGAAAATGCATGAATTGATGAACCATTTTGAAGGGAAATATTCCATCAATTATTGTCATTATAATGGTTGTAACAAAATGTTTAAAAGTGTAAAGCTACTTAATATGCATATGCGTATTCATGAAAATAGAGAAAAAGTTTCATGTGAAAATTGTGGAAAAACATTTCAATCAACATCGGGATTGAAGAAGCATGCCTTGAAAAAACATAATCTTTTGTTGTGA
- Protein Sequence
- METNREKNLILNQDKNNLKESCYLCGKNSERLAEKRYGSCKECKERKQRCRERKCRRCGKKYTAILLKENNPSTRNCDDCFKNKKKIKGINSRPSINFAQCDLCGATFDKKILIYVHMEKHRGDTTCRVCNASFSRRNTLRMHLRTHFENFICEQCGYSTTNKITFRHHIKLHTEINVNGKNTQKSTYVKGKYPAVRGNFPCSHCGLVFVTKTTLIGHEKRQHENGNKGFTCKDCKITIFRQKEFREHMMTHSNKPLLFCHYPNCDYYYNTIKRMNMHIKYVHETKDDSYECQNCKKTFKHRMSLEKHQRNNRCIPLSVRKLNGAKKNVSKSTKYFENKTAEELERNAKIAKQQYLEIRGLSKIIEKENEEKNDDIFKEDKNQIKLVFPKIESISDNDDSASLHENEYFEQDTKSNNALDNTNIQPFLKIEIKSEPVDNGSIVIENIYNEKVSNMCTNIIPINNRYPLVHLERLDNAMLQSISKIKKEEKDDLDFSLNISPEKKQIKVHIKFVHLSTIDYSCPHCPSKYKTKNFLKRHIEESHIGIKRFSCQFCGKEFKRKEHLQDHESRHAEPVTCHICGKLVKKLEQHVKNIHKEKREFKTFPCSYCGKFFNKYILKSHINNVHNKLHVCLKCGENFTTPTDLKMHELMNHFEGKYSINYCHYNGCNKMFKSVKLLNMHMRIHENREKVSCENCGKTFQSTSGLKKHALKKHNLLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -