Ppem002971.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010001318.1:10774-14435[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.062 2.9 8.5 2.2 1 23 161 184 161 184 0.96 2 21 0.42 20 5.9 2.0 1 23 191 214 191 214 0.86 3 21 0.067 3.1 8.4 0.1 1 23 223 246 223 246 0.92 4 21 0.0011 0.05 14.1 0.9 1 23 278 301 278 301 0.97 5 21 0.03 1.4 9.5 2.4 1 23 308 330 308 330 0.96 6 21 6.3 2.9e+02 2.2 0.1 1 23 338 361 338 361 0.90 7 21 0.046 2.1 8.9 1.3 1 23 408 430 408 430 0.98 8 21 0.14 6.4 7.4 1.8 1 23 437 460 437 460 0.93 9 21 0.045 2.1 8.9 0.2 2 23 470 492 469 492 0.92 10 21 0.003 0.14 12.6 1.2 1 23 508 531 508 531 0.95 11 21 0.012 0.58 10.7 0.5 2 23 536 558 535 558 0.94 12 21 0.046 2.1 8.9 0.7 2 23 575 596 574 596 0.93 13 21 1.9 88 3.8 5.4 2 23 606 627 605 627 0.96 14 21 0.28 13 6.5 3.2 1 23 633 655 633 655 0.97 15 21 0.0052 0.24 11.9 1.0 2 19 664 681 663 686 0.89 16 21 0.013 0.62 10.6 0.0 1 23 692 715 692 715 0.96 17 21 0.0048 0.22 12.0 0.5 1 23 723 745 723 745 0.96 18 21 1.1e-05 0.00053 20.2 2.4 1 23 751 773 751 773 0.98 19 21 0.002 0.094 13.2 8.1 1 23 781 803 781 803 0.96 20 21 2.1e-05 0.00099 19.4 1.2 1 23 809 832 809 832 0.97 21 21 0.00067 0.031 14.7 0.2 1 23 838 860 838 860 0.97
Sequence Information
- Coding Sequence
- ATGCAGTCACTTTGTCGAATTTGTCGCAAAGACTGTTCCCGACCAAGTTCATCAATTGAAATTTCATCGATCCATGATGGCGTTTTAATCCATGAAATGCTGTCTAAAACATGTCCGATTGACATCGATGATCCCATCACACAACTTTTTCCACAAAAAGTTTGTCACGAATGTCTAGAAGTTCTCACAGCTGCTTACAATCTTCAAAGAGTTTCAGTTGAAAGCGATCAGTATTTTCGTCAAATGATTTTTAGTGACAAACTTGTGGTTAAAAGTGAAAAAGATGATGATGAAAATTTGGTAAAAGAAGAAGAAATTGACATAGCTGATGATGACAGCATGCCATATGAAGAGCCAGAAATTGAAATGGAAACTGAAAATGTTGCTTATTTAATTCCATTGCCAAAAACTACTACAAAATCATCAATAAATTTCAATCCACGAATCGTTGCTGAGTCTGCTACAAGTTTTGATCCTTATTATGAATGTAATTTCTGTCAAATTCAATTGAAACCAAGAAGTAACATGTTGAAACATTTGAAACATGAACATGATCCTTTCCTGCTTCCTTATCATTGCAATTATTGTCCAGCACGTTTTAAAAGTGATTATAAAAGAGAACTGCATGAGTCAATTCAACATGATGACGAAAATGAAATTTCAGTATTTGTATGTGAATATTGTGGTGTCAATGGTGTGTCAAAAGAAGGCATGAGACATCATTTAATTGACGATCATGATGTGAGAAATACTAAAAAGATCAAACAAGAAGATTCCTTTAATTTCACTCCACGACCATGCAATAAAGCTCAAAGATATGAAGACATAATTTATGCATGCAATTTTTGTGATGTGAAATTGAAACCAAGACAAAATCTCATAAGACACATGCAGAAAAAGCATGATCCAAAACTTCTTCCACATTATTGCAAAAAATGTCCATTAAGATTCAAAGATGCTGAAAAGAGAGCAACACATGTCACAACACATGAACCTGATGAGCCAAAAATTTTCATTTGTGAACTTTGTACTGTAACTGGAACGAGAGAGAATGGAATGTTGCAGCATAAAATGGATGATCATGGTGTTCAAGTTGAAGGTGAAATTAGCAGTCAAATTTTCAATGTCGAAGAAAATGTTGTTGTGAAAAAGAAATCGACTGAAATTTTCCATCCACGACCTGCAGATGGAAGTTGGTCAATTGGATTTGAGGACACAAGCTACGCCTGTAACTTTTGTGATCAAAAAATCAAGCCGAAAAGTCGAATGCTTTATCACATGCGATCTCATAATCCTCAAATTTATCCACATGCTTGTAAACTTTGCATTTCTCGATTTAAAACAGAAAATGAACTTTCAACTCACATGCGACTTTTACACGATGAAAATGATGACTCAAATATTTTGACTTGTGATTTATGTGGTGTAACTGGAACTCATAAAGAAGGCATGGAAAATCACATGACTGACGATCATTTGCTCATTCCATTTAGACCATCAAAGCGAGGACATTCTGAAACTTTCCGTTGCAATTTATGCTCAGCTAAATTCATGCAGAAAAAAAGTCTCGATAATCACATGCTCGCAAGACATCGTGAGACAACAAAATGTGATAGTTGCGATGCTGAATTTACAACAAAGCGTGATATGAGCAATCATGTGATGCAAGTGCATTGTAAATTATTTAGAGAAGTTGAACCTCATGAAATTACAGTAAATTTGAAATGCATAAAATGTGAAGAAGAATATTCGACTCATGAACAGCTAATTCAACATGTTATGAGTCATAAACCATCATTTAAGACAGAGAAAACAAAATGTCACTTTTGTCCAAGAAATCTCAAAACTTTTCATGATTTTCTTGAACATGCAAAATATCATGCACAACCTTGCACTCATGAATGTCTTACTTGTAAAAAGAGATATCCATTTGATGACAAATTATTTAGTCATGTTAAAAATCACAAAAGATATGACTGCTACAAAGTTGAGTGTAAAAAATGCAAACAAAAATTCAGATCAGCTAAAGATTTGGAAATTCATGACAAAGTTAAGCACAATAAGGAGACACTTTTCATTTGTCCAATTTGTGCAAAATCTATGAGTAGTGCTAATGGATTGGATCAGCACATAAGATATGTTCACAATAAAGATCAAGAAAAGAAATTCCAATGCAAATCATGTCCAATGAAATTCATTTTAAAGACTAAATTAATTAGACATGAAGCAATACATAGTACTGAGAGGCCACATGTTTGTGAGATCTGTGGAAATTCATTTAAACACAGCGAAGGTTTAAATCTTCATATGAAACGTCACAATGGAACATTAGAAAGAAAACACGCATGCAGTCAATGTAATCATCGTTTTACAACAAAGCACAGATTAGAACAACATATGATGACTCACACTGGATTGAAACCACATGAATGCAAATTTTGTGATCGTGCTTATGCATCTAAAGGTGATTTAGTGAAGCATATGCAGAAACTTCATGTTGGTGATGCAATTTATCAATGTGACAAATGTCCAAGAGCATTTAGACTGATTGTAGAGTTGAGAGAACATCAGTCAGAGCATGCAACTTATTAA
- Protein Sequence
- MQSLCRICRKDCSRPSSSIEISSIHDGVLIHEMLSKTCPIDIDDPITQLFPQKVCHECLEVLTAAYNLQRVSVESDQYFRQMIFSDKLVVKSEKDDDENLVKEEEIDIADDDSMPYEEPEIEMETENVAYLIPLPKTTTKSSINFNPRIVAESATSFDPYYECNFCQIQLKPRSNMLKHLKHEHDPFLLPYHCNYCPARFKSDYKRELHESIQHDDENEISVFVCEYCGVNGVSKEGMRHHLIDDHDVRNTKKIKQEDSFNFTPRPCNKAQRYEDIIYACNFCDVKLKPRQNLIRHMQKKHDPKLLPHYCKKCPLRFKDAEKRATHVTTHEPDEPKIFICELCTVTGTRENGMLQHKMDDHGVQVEGEISSQIFNVEENVVVKKKSTEIFHPRPADGSWSIGFEDTSYACNFCDQKIKPKSRMLYHMRSHNPQIYPHACKLCISRFKTENELSTHMRLLHDENDDSNILTCDLCGVTGTHKEGMENHMTDDHLLIPFRPSKRGHSETFRCNLCSAKFMQKKSLDNHMLARHRETTKCDSCDAEFTTKRDMSNHVMQVHCKLFREVEPHEITVNLKCIKCEEEYSTHEQLIQHVMSHKPSFKTEKTKCHFCPRNLKTFHDFLEHAKYHAQPCTHECLTCKKRYPFDDKLFSHVKNHKRYDCYKVECKKCKQKFRSAKDLEIHDKVKHNKETLFICPICAKSMSSANGLDQHIRYVHNKDQEKKFQCKSCPMKFILKTKLIRHEAIHSTERPHVCEICGNSFKHSEGLNLHMKRHNGTLERKHACSQCNHRFTTKHRLEQHMMTHTGLKPHECKFCDRAYASKGDLVKHMQKLHVGDAIYQCDKCPRAFRLIVELREHQSEHATY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250386;
- 90% Identity
- iTF_01250386;
- 80% Identity
- -