Ppem014139.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003395.1:55739-57839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.3e-05 0.0025 18.1 0.3 2 23 41 62 40 62 0.92 2 15 0.00014 0.0067 16.8 3.8 2 23 68 89 67 89 0.97 3 15 0.00023 0.011 16.1 0.4 1 22 94 115 94 118 0.91 4 15 0.026 1.2 9.7 3.0 2 23 179 201 178 201 0.95 5 15 0.0033 0.15 12.5 0.4 1 21 206 227 206 231 0.92 6 15 0.0034 0.16 12.5 0.3 2 23 244 265 243 265 0.96 7 15 0.0015 0.07 13.6 0.4 2 22 271 291 270 294 0.89 8 15 0.021 0.97 10.0 2.1 2 23 304 325 303 325 0.95 9 15 1.9 86 3.9 0.5 1 19 330 349 330 350 0.84 10 15 0.012 0.55 10.8 2.6 2 23 368 389 367 389 0.97 11 15 0.0083 0.38 11.3 0.2 1 23 394 418 394 418 0.92 12 15 2.2 1e+02 3.6 0.2 1 23 429 451 429 451 0.93 13 15 0.00019 0.0086 16.4 0.9 1 23 456 479 456 479 0.94 14 15 2.5e-05 0.0012 19.2 4.8 1 23 585 607 585 607 0.98 15 15 0.012 0.57 10.7 0.2 1 23 612 637 612 637 0.95
Sequence Information
- Coding Sequence
- ATGGAACCGCAATTCAAAATGATTCCAATAACAAAAAGTAAAACTCATCTAAGAAAGAAGTCAATTGATTTCATCAAAATTTATAATAAGCATTTTCTGAGAAACAAAGAAGATAAGCTTATATGTGACATTTGTGATTTGGTTTTTTCTTCAAAAAATAGTCTAAGACGCCATAAAGTGTTGCATGGAGAAAAAAAAATCAAGTGCACGAAATGCGATTTAAAATTTCATCGTAATGACTACTTAAAAAGGCATCTAGCAAAGCACAAAAATTCTCTTTTCAAATGTCCAACATGTTCAAAGGATTTTTCAAGTACAATGGATTTGCAAGAGCATCAAGTGAAAGCAGGACATAGAAATGATGTGGATAAAAAAATATCTGAATCGGAAAATAATTTAATTAAAAATGTTTTAAACGTCGAAGAGACATTAAAAAAGAAAAATTCAACAGTGAAAACTGAAAATTTAACTCAAAAATCAATTAAAGACATGCAAAAATTACAATGGAAGAAAAGTCAAAATACTCAACATTTGAAGTGTAACATTTGCAAATTCAAATTTGAATCAGTTCAAGCTCTCAACCATCATTTCAATTCGAGACATAAAAATCTCAATTACAGCTGCACATTCGAATGTGGACTAAAATTTTCATCTTTCATTGAATTAAAAATTCATCAAGATGAAACAGGTCATAAAAATAAATACAAATTATTTACTGGTCCTAGAACAAAGTGTCCTGAATGTGATATGGAATTTAAAACTCGCATCGGATTTTATGGACATTTGATGAATCATTCTTACTTTGAAATTGAATGTTCAGTTTGTAACATGAAATTTTCAATGTCAAAATATTTGAAAATTCATCAAGCAAAAACTGGACATGAAAACCCTATTAAAAAAGGAAATTTAAATTGCACTATGTGTGGCCGAAAGTTGAGAACTTTACGAGGACTTAAATACCATCTAGAGCATCATGATAAATTCAAATTTCCTTGTGTTGACTCGTGTGGCATGAAATTTTCTAAAGCAAAATACTTACGATTTCATCAATGGAAAAGTGGTCATGGCGACCCACCAAAATCTTTCACAGCAAGTAAACAAAAATGTTACTTATGTGGTATGAATTTTGAAAGATCAAAATTTTATTATAAGCATTTGAAAAATCATAAAAATTTCATTTATAAATGTGAAGAATGTTTGCTGAGATTTCCAATGAAAAAAGTGCTTGAAAAACATCTAAAAATTGCAGAACATAAAAATAATGAAATGGCTTACAAGAAACATTTTCAATGCATCGAATGTGATATGAAATTCATTTGGAAAATTGAATTTGAGCAGCATTTAGAAGAACATGAAAATTTTAAATATTTGTGTGACACTTGCGGTATGAAATTTCCACGAAAAAAGAATTTAAGTGAGCATAAGTCAAGAGCACATTTTAAAGAATTTCAAGAAGTTTTATATGCAAGGAGAATGAGGACAAGAAGTCAAAGTCGTGCTAGAGCAATTGGTGAAATTTTTGATGATTCACAAAAAACTGTAAAAGTTCACTATGCAAAATCTTTTGTCTCTGACTATAGCGAAGTTTCCTATGATGATAGTTCAGAATCTTCTGAAAATGATGAAGAAACTTCAATAACAGATTCAGACTATGAAGAAGAAATTAATCAATCAGAAAATTATAAGTCAAAAAATAACAAAATTATCACACGAAATTCAAAAGTATTGGAAAATTTTAAAACAGAAAAAACTTTTTCTTGCACAAAATGTGATAAAATTTTTAAACGACTTGATCATATAAAAAAGCACCTAAAGAGTCATGAAAATTTCAGATATGTTTGTCAAGTGAACGGATGTAAAATGAGATTTGCAAATAGTGTTTACTTAGCTGAGCATAAATCACGAGCACATAATGAAACATGA
- Protein Sequence
- MEPQFKMIPITKSKTHLRKKSIDFIKIYNKHFLRNKEDKLICDICDLVFSSKNSLRRHKVLHGEKKIKCTKCDLKFHRNDYLKRHLAKHKNSLFKCPTCSKDFSSTMDLQEHQVKAGHRNDVDKKISESENNLIKNVLNVEETLKKKNSTVKTENLTQKSIKDMQKLQWKKSQNTQHLKCNICKFKFESVQALNHHFNSRHKNLNYSCTFECGLKFSSFIELKIHQDETGHKNKYKLFTGPRTKCPECDMEFKTRIGFYGHLMNHSYFEIECSVCNMKFSMSKYLKIHQAKTGHENPIKKGNLNCTMCGRKLRTLRGLKYHLEHHDKFKFPCVDSCGMKFSKAKYLRFHQWKSGHGDPPKSFTASKQKCYLCGMNFERSKFYYKHLKNHKNFIYKCEECLLRFPMKKVLEKHLKIAEHKNNEMAYKKHFQCIECDMKFIWKIEFEQHLEEHENFKYLCDTCGMKFPRKKNLSEHKSRAHFKEFQEVLYARRMRTRSQSRARAIGEIFDDSQKTVKVHYAKSFVSDYSEVSYDDSSESSENDEETSITDSDYEEEINQSENYKSKNNKIITRNSKVLENFKTEKTFSCTKCDKIFKRLDHIKKHLKSHENFRYVCQVNGCKMRFANSVYLAEHKSRAHNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -