Ppem013844.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010000799.1:4579-7470[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.079 13.4 3.9 1 23 159 181 159 181 0.97 2 11 0.00061 0.028 14.8 9.7 1 23 187 209 187 209 0.96 3 11 9.6e-05 0.0045 17.3 7.9 1 23 215 237 215 237 0.99 4 11 0.00049 0.023 15.1 2.3 1 23 243 265 243 265 0.95 5 11 3.6e-05 0.0017 18.7 0.8 1 23 271 293 271 293 0.96 6 11 2.7e-05 0.0013 19.1 0.2 1 23 299 321 299 321 0.96 7 11 0.0003 0.014 15.8 2.5 1 23 326 348 326 348 0.98 8 11 0.0026 0.12 12.8 0.0 1 23 354 377 354 377 0.94 9 11 0.00044 0.02 15.3 0.1 1 23 491 513 491 513 0.97 10 11 0.0037 0.17 12.4 4.5 1 23 647 669 647 669 0.95 11 11 4.2e-05 0.0019 18.5 2.0 1 23 679 701 679 701 0.97
Sequence Information
- Coding Sequence
- ATGATAAATCGGCGTATGATCCTCGTTAGCGATGGCCAAAACGCTGGTCAGCATCGAGTAATTACGTCAAGTGGAGGGAATACCATTTTGGATGGGAAAACGCAAACAGTTTACACAACAAGTGATAAGACTACACATTTTATGAGTCCAATAGGATCACTTCAATTGACTGCCGAGGAGTGTAATGAAATTTTAATGAAACGTGCAGTTGCTGCAGTGCAAAATCAGCAAGCAATTACTACGACGGCTTCAGATTCGCATAGTGCACCGATATCAATACAAGTTCAGAAGGTTCTACAAACACTAGAAGACAGTGACGAACAACAGTTAACTCATTGCAAAATGGAACCAAATATGAGTTCATCACCGAAATTAGAAACAATTGAAATTGTTCACTTTGAAACTGCTGAAGACACGAAACCAATTATTCACAAAACACGCAAGAATGATCCAGGAAGTAGTAAAGAACGTCCTTATGCATGCGAACAATGCGGAAAGACATTTTTGTTGAAACATCATTTAACAACTCACGCTCGATCTCATACAGGAGAGAGACCTCATGTTTGTCCACATTGTGGAAAGGATTTTAGCCATAAACACTGTTTAAACACTCATTTATTGTTACACACCACTGAACGTCCATATCAATGTGGCGAGTGTAAAAAATGTTTTACTTTGAAACATCACTTGTTGACACATTTACGAGTGCACACTCGTGATCGACCATTTGTATGCCAAGAATGCGGTCGATCTTTCCCTTTGAAACGTCATTTAGTAACACACAGCAAATTTCATGCTGGAGAGCGGCCTTATATTTGCGAAGATTGTGGTGAAAGCTTTGCACAGAAAGAACATTTAGATATGCATTCACGATTTCATGGATCAGTGAATCCATTTGCTTGTAATGATTGTGGTGCCACATTTGCACGTAAATTTCAATTGATTAATCATGGAAAGCTACATGGACGAGTGCCACATTCATGTACAGTTTGTGGACGAGAATTTTTACAAAAACGCACATTAGCGACTCATATGAAGACTCATACGGGCGAAGCTTCATTCCCATGCTTAGCGTGTGGAGAAGGATTTGCATCGAAAGCTGAATTAAATGCACATAATCGATTAGTACATGGTGGTTTAAATCCAAACGCTCCAAACACAACAATCGTCACAAATAAAACAGCCACAGTTATTCAACAGCAGCAATCACAAGCTCAACAGCATGCTGCACAGCAAGCTGCTGCTCATCAACAAGCCCAACAACAAGCCGCTGCTCAACAGCAGGCTCAGCAACAAGCTGCTGCACAACAAGCTGCAGCTGTTCAAGCTCAGCAACAACAGCAGCAGCAACAACAGCAGATCGAGGTACAACACATTCAGCAACAGCAGCAAGCTCAAACTGTAACAGTTGTTGGCAATCCAAATATTCTAACTGCCACAATTAGTGGTGAAACGCCTCCTCGTCTTCAATACGCTTGTCGCGAATGTGGAAGTGTTTTCAACAGTCGTGAAGGACTTGCTCTGCATCTTCGATTACATTCAGGCGATAAGAGTCTTATTAATGATTTATGTGCACTCACTGCCTCCATTCCTGGTCATCTCTTCCAAGGAGTCAATCAAATTAATTTACCAACGGGAACAACTTTTGTGACCACTCCAGGTGCATCTTCATCACCAGTTCCAGTTCAAATTATCACTTCTACTGGCGAAGTCGTAAATCAAATTCTTCAAAGTCCAACGCACACGACACAACAGCATCAACAGATACAGATTCAGACTCAGCCGCAGCAACAAACAGCTCAAATGAAACAGCACATTGTTCAACAACAAGCTGTTCAAGTTCAACAGCAGCAGCCTCAACAAAACCAAGCCCAACAGCAGGTACAACAAGCCACAGTTGTTCAAATTACATCACCGCCTCAGCAGAAGGCTAAAACACATTTCTGTCAATATTGTGGAAAAAGCTTCGTTGCCAAGCACGGTCTTATGCTTCATAACAAACGTCATCCTGATGGAAGTTGTACTTTACGTTCACATGTGTGTCCTGAGTGTGGCAAAGCTTTCCTTCAAAAGAATCATCTTATTCTTCATCAACGTCAGCATTTAGAACAAAATCGTGGTGGGAAATCTAATCAACAACAACAGCAGATTGAAGGACAACCACAAGCACAAGCTCAACAAAATGGTGATCAATTAACACAGCAAGGCCAACAACAGATCACAATTCAGCAATCAGCACAGGGTCAAGCTCAACAAGGTGGTCAGCAAATTCAATTGGCGACTAGGAATGTCCTCATGTCAAATCAACCAGTGCTTCAAGTTCTGCCCGATGGCGGTACATGGGTGAAATATGAGATTATACAATCAGATCCAATGGAATAG
- Protein Sequence
- MINRRMILVSDGQNAGQHRVITSSGGNTILDGKTQTVYTTSDKTTHFMSPIGSLQLTAEECNEILMKRAVAAVQNQQAITTTASDSHSAPISIQVQKVLQTLEDSDEQQLTHCKMEPNMSSSPKLETIEIVHFETAEDTKPIIHKTRKNDPGSSKERPYACEQCGKTFLLKHHLTTHARSHTGERPHVCPHCGKDFSHKHCLNTHLLLHTTERPYQCGECKKCFTLKHHLLTHLRVHTRDRPFVCQECGRSFPLKRHLVTHSKFHAGERPYICEDCGESFAQKEHLDMHSRFHGSVNPFACNDCGATFARKFQLINHGKLHGRVPHSCTVCGREFLQKRTLATHMKTHTGEASFPCLACGEGFASKAELNAHNRLVHGGLNPNAPNTTIVTNKTATVIQQQQSQAQQHAAQQAAAHQQAQQQAAAQQQAQQQAAAQQAAAVQAQQQQQQQQQQIEVQHIQQQQQAQTVTVVGNPNILTATISGETPPRLQYACRECGSVFNSREGLALHLRLHSGDKSLINDLCALTASIPGHLFQGVNQINLPTGTTFVTTPGASSSPVPVQIITSTGEVVNQILQSPTHTTQQHQQIQIQTQPQQQTAQMKQHIVQQQAVQVQQQQPQQNQAQQQVQQATVVQITSPPQQKAKTHFCQYCGKSFVAKHGLMLHNKRHPDGSCTLRSHVCPECGKAFLQKNHLILHQRQHLEQNRGGKSNQQQQQIEGQPQAQAQQNGDQLTQQGQQQITIQQSAQGQAQQGGQQIQLATRNVLMSNQPVLQVLPDGGTWVKYEIIQSDPME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346937;
- 90% Identity
- iTF_01250379;
- 80% Identity
- -