Ppem008354.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003920.1:55673-57307[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00041 0.019 15.4 0.7 1 23 3 26 3 26 0.97 2 15 0.0001 0.0047 17.3 1.1 1 23 29 51 29 51 0.98 3 15 0.0022 0.1 13.1 0.2 1 23 55 78 55 78 0.94 4 15 0.32 15 6.2 0.9 1 23 87 110 87 110 0.90 5 15 0.88 41 4.9 8.2 1 23 118 140 118 141 0.95 6 15 0.00036 0.017 15.5 2.3 1 23 147 171 147 171 0.96 7 15 0.00027 0.013 15.9 4.4 1 21 176 196 176 197 0.95 8 15 0.0021 0.097 13.1 0.2 3 23 298 319 296 319 0.96 9 15 0.00034 0.016 15.6 0.2 1 23 324 349 324 349 0.95 10 15 3.3e-07 1.5e-05 25.1 3.2 1 23 355 377 355 377 0.98 11 15 4.6 2.1e+02 2.6 0.1 5 23 382 400 381 400 0.61 12 15 0.0044 0.21 12.1 1.2 1 23 407 432 407 432 0.97 13 15 0.00013 0.006 16.9 2.3 1 19 441 459 441 463 0.92 14 15 0.021 0.99 10.0 2.7 1 23 469 493 469 493 0.96 15 15 1.7e-05 0.00078 19.7 1.2 1 23 502 524 502 524 0.98
Sequence Information
- Coding Sequence
- ATGAATTATATTTGTGATTTGTGCCAAAATACATTCAATGGAAAAGGATATTTATTACGACATATGGAAAGATTTCATTTGAAATTTTCATGTGTTGTATGTAATCTCATTTATAGTCAAAAGAAGAATTTCCTCGATCATTTAAGGACTCATTTTGAAAAATATGTCTGTAATTACTGTGGAATAAATGTTTATAAAAAAGAAAAACTTGAACAACATGTACTATTAGTACATGAACCATCAAAACGACAATTCAACTATTCTTGTCGATTTTGTGAGAGAAAATTCCCTAATGCGATTTTCAGAAACAGTCATGAAAGAGATGTCCATAGGGGAAGAAAGGAGAGCGCCTTTAGTTGCAAACTTTGTAAACATACATTTTTAAAAAGAGATCATCTTAGACTGCATACACTAGAACATCATTATAGTGGATCAATCTTCTTTTGTCCTTTCAAAGAATGTGATCGATATTTTAAAACATCAAAATTATTAAAAACTCATGAGAAAATTCATGGTCCTGCTGGATATAAATGTAAATCATGCAACAAATCATTTCAACAATCATCTAATTACTCAAAACATAAAAAAAGATGCAAAGGACCAGTAAAAGTGATCATTCACACTGAAGAAGAATTGGAAAATTTTTCAAAAATTGCCAAAGAACAATTTGTAATGCATGGTGGAAAATTAAAAACAAATATTAAGACTGAAGAAATTAAAGTCAAAGAAAAAGAAAACAAAGTCAATCAAAAAGTAAAATTAAAAACTATCAAAAAAGTTCAAACAATTAAAAAGTCTAAAAATAATCAAAATGTTAAAAGAAAAGCTGTCAAAATTAAAGAAGAAGATTTTCAAAAATCAATCAATGAAAACGATTCAGAAGAAACAATTTGTGATCTTTGTGGTGTAAAAATTATGAATCTTTCAAGTTTACGAAAACATATGATCACAAGTCATAAAAAAACTAAATTTCCTTGTACTGAATTGAATTGTAATTTAGTATTTAATTTAAGAGGAAATCTTCAAAAGCATATTAAACAAGTTCATCTTAAAGAGCGACCATTTCAATGTGACATTTGTGGAATTTCTTTTAAAACTAAACATCATTTAGCTAATCACTTAAAAATTCATAGACATCCACAAAAATGTCCTATCTGTTCAATAACTCTTCCTAATATTGATGCACATATTAAAAGACATACACAAGCTAAAAATACTTTCACTTGTCCGCAATCACAATGCAATCGTAAATGTGCAACAAAACAAGCATTAGATGAACATATTCAAAGAATTCATGAGAGAAAACCACTTGGAAAATTATATTCTTGTTCTGTCTGTGATGAGAATTTCATTAGAAATTCAGATCTGCGAAGACATTGTTTCGTTCATTATCAAGGTAAAATTTTTTCATGTTCTCATTTAGGTTGTGCTGAAATGTTTAAAACTTCATACAAACTACATTTACATCAAGCTGTTCATAACACCAGTAAAAATAAGAGAAATTTTGTTTGTGAAATTTGTAGCAAAAGTTATCCTAGACAAACAGCTTTGTATAAGCATAAAAAATCACATGCTGTTGTGTGA
- Protein Sequence
- MNYICDLCQNTFNGKGYLLRHMERFHLKFSCVVCNLIYSQKKNFLDHLRTHFEKYVCNYCGINVYKKEKLEQHVLLVHEPSKRQFNYSCRFCERKFPNAIFRNSHERDVHRGRKESAFSCKLCKHTFLKRDHLRLHTLEHHYSGSIFFCPFKECDRYFKTSKLLKTHEKIHGPAGYKCKSCNKSFQQSSNYSKHKKRCKGPVKVIIHTEEELENFSKIAKEQFVMHGGKLKTNIKTEEIKVKEKENKVNQKVKLKTIKKVQTIKKSKNNQNVKRKAVKIKEEDFQKSINENDSEETICDLCGVKIMNLSSLRKHMITSHKKTKFPCTELNCNLVFNLRGNLQKHIKQVHLKERPFQCDICGISFKTKHHLANHLKIHRHPQKCPICSITLPNIDAHIKRHTQAKNTFTCPQSQCNRKCATKQALDEHIQRIHERKPLGKLYSCSVCDENFIRNSDLRRHCFVHYQGKIFSCSHLGCAEMFKTSYKLHLHQAVHNTSKNKRNFVCEICSKSYPRQTALYKHKKSHAVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -