Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010001069.1:23016-24734[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.27 12 6.5 1.5 3 21 204 222 202 225 0.83

2 12 3.3e-05 0.0015 18.8 3.7 2 23 231 252 231 252 0.96

3 12 6.3e-06 0.00029 21.1 1.0 1 23 259 281 259 281 0.99

4 12 1.3e-05 0.0006 20.1 0.1 1 23 287 311 287 311 0.97

5 12 7.7e-05 0.0036 17.6 0.6 1 21 316 336 316 337 0.95

6 12 0.01 0.48 10.9 0.8 1 23 362 387 362 387 0.96

7 12 0.0088 0.41 11.2 0.2 2 23 397 418 397 418 0.97

8 12 2.1e-05 0.00095 19.4 0.8 1 23 422 445 422 445 0.97

9 12 9.7e-05 0.0045 17.3 1.8 1 23 454 477 454 477 0.95

10 12 6.4e-06 0.0003 21.0 0.3 1 23 483 505 483 505 0.98

11 12 0.00016 0.0074 16.6 4.1 1 23 511 534 511 534 0.97

12 12 0.0056 0.26 11.8 4.6 1 23 541 563 541 563 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.27	12	6.5	1.5	3	21	204	222	202	225	0.83
2	12	3.3e-05	0.0015	18.8	3.7	2	23	231	252	231	252	0.96
3	12	6.3e-06	0.00029	21.1	1.0	1	23	259	281	259	281	0.99
4	12	1.3e-05	0.0006	20.1	0.1	1	23	287	311	287	311	0.97
5	12	7.7e-05	0.0036	17.6	0.6	1	21	316	336	316	337	0.95
6	12	0.01	0.48	10.9	0.8	1	23	362	387	362	387	0.96
7	12	0.0088	0.41	11.2	0.2	2	23	397	418	397	418	0.97
8	12	2.1e-05	0.00095	19.4	0.8	1	23	422	445	422	445	0.97
9	12	9.7e-05	0.0045	17.3	1.8	1	23	454	477	454	477	0.95
10	12	6.4e-06	0.0003	21.0	0.3	1	23	483	505	483	505	0.98
11	12	0.00016	0.0074	16.6	4.1	1	23	511	534	511	534	0.97
12	12	0.0056	0.26	11.8	4.6	1	23	541	563	541	563	0.96

Sequence Information

Coding Sequence: ATGGATTCCAGATTAATTAAAGCTTATTGTCAATTTTGTTTGAATCTACAAACTACAAATAGTTTACGCATGCCTATAACACGAAAAATTAAACAAGATTTCTTTGACATTACGCAGAAAAAAGTAATAGTTGGAAAATTTATTGAATTCAATGAGTTTATGTCTTTTATTTTTCAGTTAAATACAACGATCTTTTGTGAATTTATATGTTGTGAACCATGCTTAGAGGAATTAGAATCTGTTCAAACGTTTCGTTCAAAACTACTAGCAAACCAAAAAGTACTTGAAAGATTGAATGAGGAGAGAAAGTTTAAAAATCAAAGTGATGTGCTTGAAGAAATTATTGCAGAAGAGATAGTAGTTCAAGAAGAATCCATAAAAACTTTGGAAAATGGCCAGTTGATTGAAGATGAAATGATTGTCGAATACTTAGAAGATGAGGAACAAATTGAAATGATTGAGGAAGTAGATGAAGAGGAAAAGACCGAGGATATTTTAAATTTAACATCAAATACAGAAAACGAAATCGAAATTTTAGAAGAGTTAGTAGATGAGCAATTAACTACTAAAAGAAAATATCAGAGAAAAAGATTGAAAACTCCCATCAATTGTCCAAAATGCGATCGACTCTTTTATTATAAAAGTTATTTTACATTTCACTTCAAAGACGTACATCAAGATCAGTGCGAGGTATGTCACCACTGTGGTAAAGTTTTTAAAAATAGTCGTCGACTGAATTCGCATGTATTGATTCACAACATGGGTGAAAAGAGGTTTAAATGTGACGTTTGTTCAAAGGAATTTAACTATTCTGGCGATTTACTGAGACATAAAAGAATTCATGAAAATATTAAAAACTACAGTTGTCCAGTTGAGGGCTGCAATAAATCTTTCGTGCAAAGTTATGCTCTCAAACTTCATTTGGATGTCCACAATAATATCAGATACGCATGTGATCATTGCGGAAATAAATTTAGTGTAAAAGCTACATTAAAAAATCATATGCTTAAATGTGTAAATGGAATAGCAACTTATAGAACACCAAGATATAGAACCAAAGACATTAATCAAACTAAAGAAAGATATAAATGTTTTATTGAGACTTGCGAGCGGGAATTTTCTAGTCGAAAATATCTTGGAGTTCATTTAGAGAAAAATCATCAAGTAAAAATGGCAAATTTTGAAAACACCTGTTTGCAATGTCAGGAAACATTTGAAAATATTGGCGATTATGCGAAACATGTTAAAATTCATAGTTGTAATTTTGTCTGCGAAATGTGTAAACTTAGATTTAAAACTGAAGAGAAATTGCAAGCTCATATCAAGAGGCTACATAAAGAAGGAGATGACAATAGGCCCTTTGCATGTAACGATTGTGGAGCTCGATTTAAAAGAACTGAACATCTGAGAGGTCATCAGCTTTACAAGCATTCAGACATAAAGAAATTTGAATGTCTAGAATGTCCTTTAAAATTCAGACAACGAGGTGAATTCAATGTTCATATGAGAGTTCATCAAGATATCAAGCCATTTAGTTGCTGGAAATGTGCTCATGTGTGCAAAACTAGTTCGAATCTAAGACAGCATATGCGTTTGGTTCATGATGGAGAAATAAACATTTATTGCTGTGATATATGTCAAGCTACTTTTAAATATAATGTCGATTTAAGTCATCATAAAAAAGATCACAACACAGTTTTTGAGCACTTGACCACTTAA
Protein Sequence: MDSRLIKAYCQFCLNLQTTNSLRMPITRKIKQDFFDITQKKVIVGKFIEFNEFMSFIFQLNTTIFCEFICCEPCLEELESVQTFRSKLLANQKVLERLNEERKFKNQSDVLEEIIAEEIVVQEESIKTLENGQLIEDEMIVEYLEDEEQIEMIEEVDEEEKTEDILNLTSNTENEIEILEELVDEQLTTKRKYQRKRLKTPINCPKCDRLFYYKSYFTFHFKDVHQDQCEVCHHCGKVFKNSRRLNSHVLIHNMGEKRFKCDVCSKEFNYSGDLLRHKRIHENIKNYSCPVEGCNKSFVQSYALKLHLDVHNNIRYACDHCGNKFSVKATLKNHMLKCVNGIATYRTPRYRTKDINQTKERYKCFIETCEREFSSRKYLGVHLEKNHQVKMANFENTCLQCQETFENIGDYAKHVKIHSCNFVCEMCKLRFKTEEKLQAHIKRLHKEGDDNRPFACNDCGARFKRTEHLRGHQLYKHSDIKKFECLECPLKFRQRGEFNVHMRVHQDIKPFSCWKCAHVCKTSSNLRQHMRLVHDGEINIYCCDICQATFKYNVDLSHHKKDHNTVFEHLTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250369;
90% Identity: -
80% Identity: -