Ppem009863.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010002858.1:8007-9881[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.1e-05 0.0042 17.4 0.6 2 23 81 103 80 103 0.96 2 15 7.4e-05 0.0034 17.7 5.0 1 23 108 130 108 130 0.96 3 15 0.0008 0.037 14.5 2.0 2 23 137 158 136 158 0.97 4 15 0.00039 0.018 15.4 2.2 1 23 162 185 162 185 0.95 5 15 0.13 5.9 7.5 1.0 2 23 192 214 191 215 0.95 6 15 0.0066 0.31 11.6 3.2 1 23 225 250 225 250 0.91 7 15 2e-07 9.1e-06 25.8 1.6 1 23 256 278 256 278 0.98 8 15 8.8e-05 0.004 17.5 0.2 1 22 285 306 285 306 0.95 9 15 0.0015 0.069 13.6 0.9 1 23 387 410 387 410 0.96 10 15 0.00044 0.02 15.3 4.0 1 23 429 452 429 452 0.97 11 15 0.31 14 6.3 0.4 2 23 460 481 459 481 0.91 12 15 0.002 0.093 13.2 0.5 1 23 490 513 490 513 0.96 13 15 0.0011 0.052 14.0 0.2 1 23 522 544 522 544 0.92 14 15 1.9e-06 8.7e-05 22.7 4.3 1 23 550 572 550 572 0.97 15 15 9.5e-05 0.0044 17.4 0.8 2 23 580 601 579 601 0.97
Sequence Information
- Coding Sequence
- ATGTCGCAATCAAATTCATCATTGATATTGGATAATGATGAAAATGCCGGTAATGAATATAATCAAAAATTGAAAACTGAAGAAAATATAATATACTACGTGGTTGATGATGAAGGTATCAAATATTATAAAGCAATTGAAATTGTGAAAGAATCAACACAACAAAATGTTTTGACTTCAAATTGCCGAAAAGAACCACAACAAAATTTCTTTGTCAAAGAAGAACCAATTAATGATTCAATGTGCACAATTTGCTTCAAACAATTTTCTTCACCAATTAAACTTGAAATACATATCAAGACAAAACATAATTCAAAGAAATATATCTGTGATCAATGCGGGAAAACATTTTCACACAAAAACAATATACGTCTTCATATGTACCATCATCGGAAATATTTTGAAGTTGAATGCCATGCATGCGGTAAAAAATATAAAACTATTCAATCATTGCGTTATCATCTGCGTCAGCATTTTGAATTTTACTCATGCGAAATATGTGATCAAGAATTCAAGCATAAAAAATTATTTGTTGCTCATCATGCTTCTGCTCATAATCAAGAACTTCTATTAAAATGCAATTTCTGTGCAAGAAAATTTGCGAGAATTGATATGCGCATCGCACATGAACGTTCTGTGCATCATTTAAATGGAAATTATCAATCTGCTCAATTTGATTGTAAGGAAAAATCATGTGAAAAATCTTTCGCTTATCATAGTGAATTGTTAAACCACATGATCTTATGTCATTATAAAGGAGATATATACTCTTGCCTTGAGTGTGGAAAAAAATTCAAGAAAAAGTCTCTTCTAAATCAACATATGAACATTCATAATAATAATTTAATGAGATATCCTTGTGAAGTTTGTAACCAAACGTTTGCATACAGAACAGGCTTAGAAAAACATATAAAAAAGAATAGTTGCAAGAATACTCCAAAATTGAAGTCAACATATAGTAAATTGTCAAAAAATCAAATGAGGGAAATCGCAAAGAAGCAGCTTTTTGAAATAACTGTATCTACTAGTCCAATTGTTGAGAATTTGAAGCATCAGGTAATAGAGAAAGAAATTTTGGAAGCCAATATGTTTTTGGACTACAATTTTAATGACGGTACTGAATATTACAAAGAAATTGACAGTCACATGCAAATAAAATTTACTTGCGATATTTGTAATGAAAGTTTTAAAAAGAAGATAATTTTATCACAGCATATCAAAAATAGTCATTTACGAACAAACTGTGATAATGATTTCAATACACATGAAATAGCAACATCTCTTTTTAAATGCTTAGAATGTGATAAACAATTTAAAAGAAGATGTGACATGGTTAATCATCAAAAGAATATTCATGCTCGTGTTAAAATTTATACCACATGCGAGCAATGTGGAAAAACTATCCTTGAAAAGAGCCTAAAAAGTCACATAATCAATCAACATTCTGAAAAGGCATATTATAAACCGTTTATATGTGATTATTGTGGCAAGCGAGAGAGATATGAGAAAAATCTTTTGCGACATGTCAACAGCGTTCACATACCACAAAGCCGCGGTATAAGTTATTCTTGTCTTGAATGTCCGGAAGCTTTTGTTCGACTTCGCGATCTTAGAGCACATTCATTTCAGCATTACAGTGGAAATATATTTCCATGTAATGTTTGTAATAAAAAGTTTAAGAGAAAGCATGATCTCCGAACACATATGTTTGTTCATAATAAGTCACAAGTTCCTATACAATGTGCAAAATGTGAACGAATTTTCCAAACAAAATCAGGTTTATACAGACATTTGCGAAACCATGAGTGA
- Protein Sequence
- MSQSNSSLILDNDENAGNEYNQKLKTEENIIYYVVDDEGIKYYKAIEIVKESTQQNVLTSNCRKEPQQNFFVKEEPINDSMCTICFKQFSSPIKLEIHIKTKHNSKKYICDQCGKTFSHKNNIRLHMYHHRKYFEVECHACGKKYKTIQSLRYHLRQHFEFYSCEICDQEFKHKKLFVAHHASAHNQELLLKCNFCARKFARIDMRIAHERSVHHLNGNYQSAQFDCKEKSCEKSFAYHSELLNHMILCHYKGDIYSCLECGKKFKKKSLLNQHMNIHNNNLMRYPCEVCNQTFAYRTGLEKHIKKNSCKNTPKLKSTYSKLSKNQMREIAKKQLFEITVSTSPIVENLKHQVIEKEILEANMFLDYNFNDGTEYYKEIDSHMQIKFTCDICNESFKKKIILSQHIKNSHLRTNCDNDFNTHEIATSLFKCLECDKQFKRRCDMVNHQKNIHARVKIYTTCEQCGKTILEKSLKSHIINQHSEKAYYKPFICDYCGKRERYEKNLLRHVNSVHIPQSRGISYSCLECPEAFVRLRDLRAHSFQHYSGNIFPCNVCNKKFKRKHDLRTHMFVHNKSQVPIQCAKCERIFQTKSGLYRHLRNHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -