Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010000554.1:6616-8565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00015 0.0069 16.8 2.0 2 23 10 32 9 32 0.97

2 18 0.04 1.9 9.1 0.1 7 23 45 61 39 61 0.86

3 18 0.078 3.6 8.2 2.1 2 23 67 88 66 88 0.96

4 18 0.00013 0.0058 17.0 1.6 1 23 92 115 92 115 0.90

5 18 0.001 0.047 14.1 5.1 1 23 121 143 121 143 0.99

6 18 0.00026 0.012 16.0 0.6 1 23 151 173 151 173 0.95

7 18 0.00028 0.013 15.9 2.9 2 23 180 201 179 201 0.97

8 18 0.00051 0.024 15.1 0.5 1 21 206 226 206 227 0.97

9 18 1.7e-05 0.0008 19.7 1.0 1 23 324 347 324 347 0.96

10 18 0.11 5.1 7.7 2.3 1 23 352 375 352 375 0.90

11 18 0.13 6.2 7.5 0.2 1 23 386 408 386 408 0.84

12 18 6.4e-06 0.0003 21.0 0.5 1 23 414 436 414 436 0.98

13 18 0.00023 0.011 16.2 0.5 1 23 442 464 442 464 0.94

14 18 0.46 21 5.8 2.7 3 23 473 493 471 493 0.91

15 18 6.7e-05 0.0031 17.8 1.3 1 23 501 524 501 524 0.92

16 18 0.00025 0.012 16.0 1.7 1 23 533 555 533 555 0.92

17 18 0.00019 0.0088 16.4 2.4 1 23 561 583 561 583 0.96

18 18 0.036 1.7 9.2 1.6 1 23 588 610 588 611 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00015	0.0069	16.8	2.0	2	23	10	32	9	32	0.97
2	18	0.04	1.9	9.1	0.1	7	23	45	61	39	61	0.86
3	18	0.078	3.6	8.2	2.1	2	23	67	88	66	88	0.96
4	18	0.00013	0.0058	17.0	1.6	1	23	92	115	92	115	0.90
5	18	0.001	0.047	14.1	5.1	1	23	121	143	121	143	0.99
6	18	0.00026	0.012	16.0	0.6	1	23	151	173	151	173	0.95
7	18	0.00028	0.013	15.9	2.9	2	23	180	201	179	201	0.97
8	18	0.00051	0.024	15.1	0.5	1	21	206	226	206	227	0.97
9	18	1.7e-05	0.0008	19.7	1.0	1	23	324	347	324	347	0.96
10	18	0.11	5.1	7.7	2.3	1	23	352	375	352	375	0.90
11	18	0.13	6.2	7.5	0.2	1	23	386	408	386	408	0.84
12	18	6.4e-06	0.0003	21.0	0.5	1	23	414	436	414	436	0.98
13	18	0.00023	0.011	16.2	0.5	1	23	442	464	442	464	0.94
14	18	0.46	21	5.8	2.7	3	23	473	493	471	493	0.91
15	18	6.7e-05	0.0031	17.8	1.3	1	23	501	524	501	524	0.92
16	18	0.00025	0.012	16.0	1.7	1	23	533	555	533	555	0.92
17	18	0.00019	0.0088	16.4	2.4	1	23	561	583	561	583	0.96
18	18	0.036	1.7	9.2	1.6	1	23	588	610	588	611	0.95

Sequence Information

Coding Sequence: ATGACAAAAACGGACATTAAAAGACAAAAATGTGAAATTTGTAATAAATTTTTGAAATCTCAAATTTATTATGAGCGACATATGAAAACTCGACATCCAAGCAATTCTCTTCATTATATTTGTGATTATGACGGAAAAACATTTGCAGCAAAGAATTATTTAAGAATTCACATGCAAAGGCATAAACAAGAAATTTTAATCTGTAATGTCTGTTGTCGTGCATACAACTCAAAAATATCTTTTCGTCGTCACCTTCTCAGTCATCTGGAGAAATTTTTCTGCTCTCAATGTGATGCAACATTCTCACATAAATCATTACTCAACAATCATGTCGCAGCTTTTCACATGAACGAAATGCCGTTTAAATGCAATTTTTGTACTCGTATGTTTGCCAATAAATCAGCACGCAATAATCATCATCAAACACACAAAAACAAGAATGAATTAAATTTTAAATGTCCAGAATGTAAAATATATTTTGAGACTAAAGAAGATTTGAGAATTCATTCATTTATTCATTATGATGGAGAGATAAAGACTTGTCATATCTGTGATCAAATTTTTAAGAGTACAAGAATGCTAAACATACATCTTCAAAAACATTCAAGTACAAAGTTTCAATGTGAAACATGTCTCGAATTTTTCGTTTTCAAAAGTGGTTTGAGAAAACATATTCGATTAAATCGATGTAAAGGACCACCAGCTTCAATACTATCATCTAATGAAAATGATATAGAAACAGAAACATTGACTGATACAAAAATTCAAGAGATTGCCAAAAAGCAGTTAGAAGAATTATCAAATAAAAAGGAAAAGAAAGTTATGAAAGAAGAAATGAAAAAGATCATTGAAGATGATGCTGAAAAGTCAGATTTAAGCGATGATCAATTTCAAATTAATAATGATGATGATTTTAGACTGAATAAAGTTGAAGTCTTAAGAACAAAAAAGAAAACTGGAGTTCATACATTCACATGTGATAAATGTGGCGAGAGTTTGAAATTTCGAAAGAATCTTGAAGCTCACATGAAAGAAAGGCATCTTCGGAATTTATATGCATGTCAATTTTGTTCATCATCATTCAAAAGTCGTCGACTTTTTAAGGAACACACTTTTGAAGTTCATGGTGTTAAGGAAAGAATTGCAATTGAAAAATATGAGTGTGAAGTTTGTGGATTAAAATTTGATGTTCGTAGCATTTATTTAACACATAAATTAGCACATGAAGACATTCGTAAATTTAAATGTGACAAATGTGAAGCTTCTTTCAAAAGTGTAGGAAATTTAAAGAGACATCAAGCAATTCATCGACATAATCGTGACTTTCTATGTGACATATGTGCTAAAAAATTTAAAACTAAACCTGCACTAAAAATTCATAGAACTATTCATGCTGACTTTCATGTATATGTCAACTGTCCATACTGCAAGACAATTTGTAAAGAGAAAAATTTAAAAACTCATATTTTCAATCAACACGGTGAAGGTCAAGAAAAGAAATTTATTTGTCAAACTTGTAAGAAATCTTTTAAAAATGAATTTTTATTGAAACGCCATGTTAGTGCTGTTCATGAAAATTCAACTCGTGGTGTAGTTTACAAATGTCCCGACTGTGACAGCTTTTTTAATCGTCAAAAAGATCTTCGTATGCATTCATTTGAACACTATGAAGGTCAAACATTTTCCTGTGACAAGTGCAGTAAACAATTTCGAAGTAATCGACTTTTAAAAAATCACTCTTTAGTTCATGATCCAATGAAATTTTCATGTGATCTATGCGATGCTGTTTTTCAAACATCAGGTGGTAAAAGAAAACATTTTATTCGTCATCATAAAGCTGTAAATGTTGAAACTGTTGAATTTGTTGATCATTTTTCAACAATTTAA
Protein Sequence: MTKTDIKRQKCEICNKFLKSQIYYERHMKTRHPSNSLHYICDYDGKTFAAKNYLRIHMQRHKQEILICNVCCRAYNSKISFRRHLLSHLEKFFCSQCDATFSHKSLLNNHVAAFHMNEMPFKCNFCTRMFANKSARNNHHQTHKNKNELNFKCPECKIYFETKEDLRIHSFIHYDGEIKTCHICDQIFKSTRMLNIHLQKHSSTKFQCETCLEFFVFKSGLRKHIRLNRCKGPPASILSSNENDIETETLTDTKIQEIAKKQLEELSNKKEKKVMKEEMKKIIEDDAEKSDLSDDQFQINNDDDFRLNKVEVLRTKKKTGVHTFTCDKCGESLKFRKNLEAHMKERHLRNLYACQFCSSSFKSRRLFKEHTFEVHGVKERIAIEKYECEVCGLKFDVRSIYLTHKLAHEDIRKFKCDKCEASFKSVGNLKRHQAIHRHNRDFLCDICAKKFKTKPALKIHRTIHADFHVYVNCPYCKTICKEKNLKTHIFNQHGEGQEKKFICQTCKKSFKNEFLLKRHVSAVHENSTRGVVYKCPDCDSFFNRQKDLRMHSFEHYEGQTFSCDKCSKQFRSNRLLKNHSLVHDPMKFSCDLCDAVFQTSGGKRKHFIRHHKAVNVETVEFVDHFSTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -