Ppem005049.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polypedilum pembai
Gene Symbol
-
Assembly
GCA_014622435.1
Location
JACWBX010003434.1:19180-23588[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.00027 0.012 15.9 0.4 1 23 229 251 229 251 0.97
2 14 3.8e-05 0.0018 18.6 2.9 2 23 258 279 257 279 0.97
3 14 7e-05 0.0032 17.8 0.3 3 23 285 306 283 306 0.94
4 14 0.00012 0.0053 17.1 1.6 3 23 334 354 333 354 0.97
5 14 0.048 2.2 8.9 1.7 1 23 448 471 448 471 0.97
6 14 2.5e-05 0.0012 19.2 0.6 2 21 481 500 480 501 0.94
7 14 0.063 2.9 8.5 0.2 2 23 511 533 510 533 0.92
8 14 4.9e-08 2.3e-06 27.7 3.6 1 23 542 564 542 564 0.99
9 14 1.6e-07 7.4e-06 26.1 2.4 1 23 571 593 571 593 0.98
10 14 2.4e-06 0.00011 22.4 1.2 3 23 605 625 603 625 0.92
11 14 0.00011 0.0052 17.1 2.7 1 23 631 653 631 653 0.99
12 14 2.2e-06 0.0001 22.5 2.2 3 23 661 681 659 681 0.97
13 14 1.4e-07 6.5e-06 26.3 1.3 1 23 687 709 687 709 0.99
14 14 0.0041 0.19 12.2 0.2 1 23 715 739 715 739 0.93

Sequence Information

Coding Sequence
ATGGAGGAGCAGATAAAGAGCGACTTCAACATAAGTAAGATGTGTCGATCGTGTTTGATGGAGACAGAAGAGGAATTGAATGAAATTTTTGGTCAACAAGATGCACCAGAAACAATAAATTTAAACCAAATATTACTTCAATTAACTGCAAACATTCAAATTGATGTAAATGATGGAATGCCCGATAAATTGTGTAAAGAATGTACCGAAAAGGCTTATTTAGCATATAATTTCAAAATAACATTGGAACAAAGCGATGCAACGCTTCGAAGTGTCTTATTTAAGGATCCAGCACTCAAAAAAGATTCGGTGTTTGACGAAGGCCATACATACCTTGGAATGGGAATCAAAACTGAAATTGCATTTGTAGACGCTGATCCTTTCATTGATGATGACGGTGAATTCGATTATGTACAGCAAACAACAGCAGCTCCAGTTGAGAATGTGGTTGCTGAAAGTCAAAAACCAGAACAAGTTCTAAATAACAATATGTATACGCAAAACGAGGGTAATGAGATTCTTGATTCTGATGAGAACTCATGTGAGAAAGATGAAGAAGATGATTGTTCACAAGAAGAGAATGAAAGCGAAAATATTGGAGATAAAATTATAGAAAAGACCAAAACGAAACCCACTTCTCCAAAGACGGAGAGTGTAGACTATATAAAAGATGAAGATGGCAAATTCATCTGTCAGATTTGCAATAAGAAGCTAGTAGATAAAAAAGGGCTCAATCTTCATTTACGGTTGCATACAGGCGAAAACTTGAAGCGATGCAATATTTGCAATCGCGGGTTCATTAAAAGCGATCATTTAAAACGTCATCGCCTTGTGCACGAAAAATCAGTGAACTGTGAATATTGTGATGAATCATTCATCACTCGTTCTGACTATAAAAGTCATGTTAAAGAAGAACACTTTGATGAACAAGGGAGCCAAGAGTCATCAGAAAAATTACCAAAGATTCAACGTATCCGTCCAAATAATACAAGTGCAATCTGTAAAATTTGCGACAAGAAATTTCAGAGAATTTCTACACTACGAACACATCTAAATCAACATTTGATGTCAACATCGTTCGATGATATTGATATCAAGAACAAAATTTTCCTATTTAATCCACTCGAAATTGATTTAGAAAAGGCATCAAATCAGGATTTGCACTTGTATGTCAAAAGCAAATTAAATGAGAATGAGTGTGAAAAGTTTTATCAAATTGTTACTCGAGATGGACATGAGTTATTACTGAGTGATTCAGAGACAGAAGATGAAAGTGAAATATGTCATCCTGATGACAGAATTGAACTTGCTATTGAACAAAATCAAAATAATCAAAAGTTTTACACATGTACTAGATGCATTAAAACATTCAAACGCAGCAAAGAATCACTTAATCATATGATGATTGATCATATTCATGAACTTGAGGAATTTATTGACAAGTGTTCTATATGTAACCAATCCTTTCCCAATAGTTACACTCTACAGAAACATCTTAAATCGCAATGTGAAAATAAAACAAAGAAATTAAACTGTAATACTTGCGGTAAAAAATTCATGTGGCTTGATTCGATGGCCAAACACATTGAAAGTGAACATCCTGGCACAGAAAGAATTAAATTGTACACATGTGAACTTTGTGGAAAAACATTCTCAAGATCAGAACATCTAGAGAGACATCGTAAGACTCATAATCCATCAGAGAAGAAATTTGAGTGTACTGTTTGTCAGAAGAAATTTAATCGAAAAGATAATTTGAGATCACACATGAAAATTCATAAAGACAATCGTGATGACGAGGACAAGCATTTATGCATTTATTGTGGCAGAGCATTTAGTAATTCTTCAAATTTAATTGTTCATATGAGAAGACATACAGGGGAGAAACCATATAGGTGCGATCTTTGTGAAAAAGGATTTCCAAGATCATCTGATCTACAATGTCATCGACGCACGCATACAGGAGAACGACCTTGCTTATGCACCGTTTGTGGAAAAGGGTTTTCACGGTCAAATAAACTTGTACGACATATGAGAATTCATACAGGCATTCGACCATATCAATGCACTTATTGCGATCGTGCCTTTACCCAATCAAATGATTTAACTTTACATATTAGACGACACACTGGAGAACGTCCATATGTATGTGGAATATGTGGAGATAAATTTATTCAAGGAACTGCACTTAAGCAGCATCAGCGAATGCAAAACCATTTTGATGATGGGACACAACCAAGTCCATATGCAAGCATAAGTGTTAACAATCCAAGTCGTTTTACAAACTCGAACCTTGTTAGTCGACGTTATATTACACAAGCACAACAACAGCAGCAGCAGGATCAAAATTCACAAGTTCCTATTAAAGCCGTTATACCACGACGAAGAGCAGCAGCAGCAGTAAATAATAACAGCAATTTAAATGGGAATAACAATCATCTACAGCAAATCCAAATTCCAGTACAAAATCAAATGCTTCAGATACAACCCACAACATCAACAACAATTATTATGAATCCACAAGACAGCGTGACAACTGATATCATAAGAACACCTTCACCTCATACACCTTCAACAACTCCTATTTTACAAGACATCAAACCAAATTTACAAAATTTAAATTTGCCTCAATATAATGGTCAGACAATGACAAACAATATGGAAATTACGACAGCAACACTATTTACAATGTCATTCAACCAAAATTTTCAAAATCACAATTAG
Protein Sequence
MEEQIKSDFNISKMCRSCLMETEEELNEIFGQQDAPETINLNQILLQLTANIQIDVNDGMPDKLCKECTEKAYLAYNFKITLEQSDATLRSVLFKDPALKKDSVFDEGHTYLGMGIKTEIAFVDADPFIDDDGEFDYVQQTTAAPVENVVAESQKPEQVLNNNMYTQNEGNEILDSDENSCEKDEEDDCSQEENESENIGDKIIEKTKTKPTSPKTESVDYIKDEDGKFICQICNKKLVDKKGLNLHLRLHTGENLKRCNICNRGFIKSDHLKRHRLVHEKSVNCEYCDESFITRSDYKSHVKEEHFDEQGSQESSEKLPKIQRIRPNNTSAICKICDKKFQRISTLRTHLNQHLMSTSFDDIDIKNKIFLFNPLEIDLEKASNQDLHLYVKSKLNENECEKFYQIVTRDGHELLLSDSETEDESEICHPDDRIELAIEQNQNNQKFYTCTRCIKTFKRSKESLNHMMIDHIHELEEFIDKCSICNQSFPNSYTLQKHLKSQCENKTKKLNCNTCGKKFMWLDSMAKHIESEHPGTERIKLYTCELCGKTFSRSEHLERHRKTHNPSEKKFECTVCQKKFNRKDNLRSHMKIHKDNRDDEDKHLCIYCGRAFSNSSNLIVHMRRHTGEKPYRCDLCEKGFPRSSDLQCHRRTHTGERPCLCTVCGKGFSRSNKLVRHMRIHTGIRPYQCTYCDRAFTQSNDLTLHIRRHTGERPYVCGICGDKFIQGTALKQHQRMQNHFDDGTQPSPYASISVNNPSRFTNSNLVSRRYITQAQQQQQQDQNSQVPIKAVIPRRRAAAAVNNNSNLNGNNNHLQQIQIPVQNQMLQIQPTTSTTIIMNPQDSVTTDIIRTPSPHTPSTTPILQDIKPNLQNLNLPQYNGQTMTNNMEITTATLFTMSFNQNFQNHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01250351;
90% Identity
iTF_01250351;
80% Identity
-