Ppem005831.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003192.1:14224-17157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00051 0.024 15.1 0.5 1 23 82 104 82 104 0.98 2 20 0.002 0.09 13.2 2.4 1 20 109 128 109 130 0.93 3 20 0.00013 0.0059 17.0 1.8 3 23 132 153 131 153 0.97 4 20 0.00025 0.011 16.1 0.8 2 23 164 186 163 186 0.96 5 20 0.00074 0.034 14.6 0.3 3 23 196 217 195 217 0.97 6 20 7.6 3.5e+02 1.9 0.1 2 10 222 230 221 233 0.85 7 20 3.1e-07 1.4e-05 25.2 0.3 1 23 249 271 249 271 0.98 8 20 1.8e-05 0.00084 19.6 3.3 1 23 275 297 275 297 0.96 9 20 0.00019 0.0088 16.4 2.0 1 23 303 325 303 325 0.94 10 20 0.35 16 6.1 0.2 2 23 331 352 330 352 0.94 11 20 0.051 2.3 8.8 0.6 1 23 357 380 357 380 0.96 12 20 0.21 9.9 6.8 0.7 2 17 564 579 563 585 0.87 13 20 2.9e-05 0.0013 19.0 1.3 2 23 593 614 592 614 0.98 14 20 1.2 55 4.5 0.5 3 23 621 641 619 641 0.84 15 20 3.4e-06 0.00016 21.9 0.8 3 23 649 669 647 669 0.97 16 20 4e-05 0.0018 18.6 0.5 1 23 673 695 673 695 0.98 17 20 0.0002 0.0094 16.3 1.0 3 23 703 724 701 724 0.95 18 20 3.4e-05 0.0016 18.7 3.3 1 23 739 761 739 761 0.99 19 20 0.44 20 5.8 0.1 2 23 776 798 775 798 0.95 20 20 6.1e-06 0.00028 21.1 0.9 1 23 803 826 803 826 0.97
Sequence Information
- Coding Sequence
- ATGGCAACAGAAGAATCCAATATATTTTACATAAAAATAGAACCAGATGAAGTTCATGAAAATGAAACTAATACAGAGATCAAAAATTCTTCAATTTCTTCTAATACAAAGGAAGAATCAAGTAAAATAAAAGATAATACTTCAACTAAAGCTCGAAATATTTCAAAATCGAAATCACAAAAAGAAACTTTGAAAGATTTTTTACATCCAGTACAAGCCAAAGAAAAAACTTCTCAGCAAATTTTCAATTGCTCTATTTGCGACATAATTTTTGATTCCAAGCAAAAATGGTCTACACATATGAAAATCCATCAAGAACCAACACATCAATGTCCAAAATGTGATCGAAAATTCAAGTCAGAGAAAAATATAGCGAAACATGAGTGTGCAATTTGCAGTATTTGTGGTCATAAAAGTGCTTCAAAAAGCGACTTAAGATTGCACATGAGAAAAAATCATAGCGAAGCTGCAAACAAAATTTACTCAGTTCAATGTGATTATTGTGGTAAATATATAAAAACTAAAACCTATTTGGTTCATCATATTAGAGCTGAGCACATAAGAGATGAGAAAACACGACTTTTGTGTAGTATTTGTGGCAATGACTTTCCAACTAAATTTATGCTAAATCAGCACATAAAAATTTCCCATTCAGAAATGATTAGTTGTAAATTATGTGGAAAAATGGTGAAGCCTCTCTGCATGCCTTATCACATGAAACAAGTTCATGCAAGTGAAAGAAATTTCGTTTGCTCAATTTGTCCAGCTTCCTTCAAGACGCGTGACAATTTAAAAGATCACATAATGACTCATAATAAATCTTATTCGTGTCAATTTTGTGATAAAAAATTTTCAAGGCAGCATCAATTGAATGAACATTTGGCACTTCACAATGATCCTAATGCTTTTTCTTGCATTGTCTGTGGTCATAAGTATACAACAGCAAGTTATCTCAAAAGACACATGAAAGCACATGAGGAAAGAAATGTTAAATGTAAAATTTGTGGTGTCGATGTCAATGCTTTGAGTCTTCGTTATCATATGAAAAATTCTCATCCACTTGATCGATATAAATGCAACAAATGTGATGCAACTGGATTTGCAACTCAAAGAGAATTTAGTGAACATTTAACATTGCATGAGAAAGAAAGAGTTGAAATTGAGCAACAACAGCAAATTGAAATTAAATTGGAAAAGGAAAGAATGAGATTAAAAAGAGAGAAAGAGAAAGAGGAAGAAAGACTGAAAGCTTTGGCAGCACTTGAAGCTGAAAGAATAAAAACTAAAAAAGCAATTGTTAAAAAGGAAGAAAAAGTTCAAATGAAAGAAGTCAAAATTATGGTGGAAAAAATTAAAATAGAAAAAATACAAGAAGATAAATTTGTAACTCAAGAGCAAGTTGAAGAAGAAATTGAAGAAGAACCAATAGTAGAATTTTTAGATGAATATGTCAATGAAGATCATTTGGAAGATTATTATGATTCCTCACATCAATCCCCAAACAACACAACAGATTTTTATGACGATTCTTTAGACTTGAAAGAAGAAACGTCAACTACAGTCATTAATGAAGTACAAAGACCTTTTGACATGTTTGTTTGTGACATCATTTCAAAAAGAGGAAAAAACAAAAGAAAAAAAGAAAATTTACAACCAAAATATATAAAAATTCCTCCAAATGTTATTTTAACATGTGACTTATGTGGTGAAGAATTTGACAAAAAATCAAAACTTCTTGCTTGCATTAGAAAACATATTGGAGCAAATGAACAGCAGAAATGTGAAATTTGTGGTAAAATTTTTCCTAATTTAGTCTGTTTGAGACAGCACTTGAAGTCACATGACAACACAATGATTGCTTGTGAAATTTGTGGCAAAAGAGTAAAACCATTGTGCATGACAAGTCACATCAAGCAAGTTCATACAACTTATAAAACTTTAGCTTGCAGCATTTGTGAAAAAGTTTTCAAGACAAAGCAAAATTTACGAGATCATGAAAAAACTCACAATAAAACTTACCAATGTGCTGTTTGTGGTCAACATTTTTCACGTGGTGCGCAACTCAATGAACATATGGTGAAACATGAATCACCAGAACTGTTAGATTGTCCTCATTGTGGAATTCGACTTGCTGATAAAAGAACACTGAAGAAACACATTAAAAATATGCATGTTGAACGACCAGATGGAATAAAAGTAAAACAAGAGAAAAAATACAAATGTGAACTTTGCGATTATTCTTGTATTCAAAAAGGAAATTTGAAAATTCATTACAAAAGGCATGAAAAATATGAAGCGAGACTTAGAGCAAATCCTGATGCATTGAAATGTGAAATTTGTGAAGCACTCTTTAAGTCTGAATTGATATTGAAAATTCACATGCAAAAAGTTCACTCCGAAGAAAGATTTCCATGTGAACATTGCGGAAAAGTACTCAAAACTAATAACAGCTTGTGGTCACATTTAAGAAAAATTCATCAAATTGAGCCTGAGAAAAAAAAGAAAAAAGAAAAGCCAGTAAGAGTTGAAGGTGAAAAAAAGAAAAGACGAAAGAGAAGAAAAAGAAATGAAGCTGGTGAACTTGTAGAAAGAGAAGAAATTGAAAATGCCGTGAATGTTATTGAAGTTCATGGTGTTAATGATATGGAATTTTATTAA
- Protein Sequence
- MATEESNIFYIKIEPDEVHENETNTEIKNSSISSNTKEESSKIKDNTSTKARNISKSKSQKETLKDFLHPVQAKEKTSQQIFNCSICDIIFDSKQKWSTHMKIHQEPTHQCPKCDRKFKSEKNIAKHECAICSICGHKSASKSDLRLHMRKNHSEAANKIYSVQCDYCGKYIKTKTYLVHHIRAEHIRDEKTRLLCSICGNDFPTKFMLNQHIKISHSEMISCKLCGKMVKPLCMPYHMKQVHASERNFVCSICPASFKTRDNLKDHIMTHNKSYSCQFCDKKFSRQHQLNEHLALHNDPNAFSCIVCGHKYTTASYLKRHMKAHEERNVKCKICGVDVNALSLRYHMKNSHPLDRYKCNKCDATGFATQREFSEHLTLHEKERVEIEQQQQIEIKLEKERMRLKREKEKEEERLKALAALEAERIKTKKAIVKKEEKVQMKEVKIMVEKIKIEKIQEDKFVTQEQVEEEIEEEPIVEFLDEYVNEDHLEDYYDSSHQSPNNTTDFYDDSLDLKEETSTTVINEVQRPFDMFVCDIISKRGKNKRKKENLQPKYIKIPPNVILTCDLCGEEFDKKSKLLACIRKHIGANEQQKCEICGKIFPNLVCLRQHLKSHDNTMIACEICGKRVKPLCMTSHIKQVHTTYKTLACSICEKVFKTKQNLRDHEKTHNKTYQCAVCGQHFSRGAQLNEHMVKHESPELLDCPHCGIRLADKRTLKKHIKNMHVERPDGIKVKQEKKYKCELCDYSCIQKGNLKIHYKRHEKYEARLRANPDALKCEICEALFKSELILKIHMQKVHSEERFPCEHCGKVLKTNNSLWSHLRKIHQIEPEKKKKKEKPVRVEGEKKKRRKRRKRNEAGELVEREEIENAVNVIEVHGVNDMEFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -