Ppem005829.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003192.1:4456-7714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00046 0.021 15.2 0.3 1 23 154 176 154 176 0.98 2 19 0.0022 0.1 13.1 2.4 1 20 181 200 181 202 0.93 3 19 0.00062 0.029 14.8 0.8 3 23 204 225 203 225 0.96 4 19 0.00017 0.0079 16.6 0.9 2 23 236 258 235 258 0.96 5 19 0.037 1.7 9.2 0.4 3 23 268 289 267 289 0.97 6 19 7.3e-06 0.00034 20.9 1.9 1 23 321 343 321 343 0.98 7 19 1.8e-05 0.00082 19.7 0.3 1 23 347 369 347 369 0.96 8 19 1.6e-06 7.3e-05 23.0 3.2 1 23 375 397 375 397 0.98 9 19 1.4 66 4.2 0.6 2 23 403 424 402 424 0.93 10 19 0.0069 0.32 11.5 1.8 1 23 429 452 429 452 0.98 11 19 0.00018 0.0082 16.5 0.9 2 23 671 692 670 692 0.97 12 19 0.00018 0.0084 16.5 0.4 2 23 700 721 699 721 0.98 13 19 0.31 14 6.3 0.3 2 23 727 748 726 748 0.92 14 19 1.4e-05 0.00067 19.9 2.2 2 23 755 776 754 776 0.96 15 19 1.5e-06 7e-05 23.0 0.3 1 23 780 802 780 802 0.98 16 19 0.0042 0.19 12.2 0.5 2 23 809 831 808 831 0.93 17 19 3.9e-05 0.0018 18.6 3.3 1 23 846 868 846 868 0.99 18 19 0.5 23 5.6 0.1 2 23 883 905 882 905 0.95 19 19 6.9e-06 0.00032 20.9 0.9 1 23 910 933 910 933 0.97
Sequence Information
- Coding Sequence
- ATGACAACAGTTATTGAAAACACAATTTTCATCAAAACTGAACCAGAAGAAATAATTGAAAATGATGATGATACACCAAACATAAATTTTTCAAGTGATATTATTAAGAAAGAAAAAATTGAAAATACAAAAACTCAGAATTCTAAGAGTAATAAAAAGAACTCACAACAGGAAAAGAAGAAAATTAAAGAAAAAGTTACGGGAAATTCATTTAAACAATCAAAAGAAAAAGTGCACAAAGAAACAAAAACTCCCAAATCAAAACAAAATGAAATCAATAAAAATAATAAAAACAAATCTCCAAGAAGAAATCGTAAAGATTCAAAGAATATTAAAAGTGAAGAAAATATTGAACAAAATAAATCCAGTAAAATAAAATCTTCCTCAAATACAGAACGAAACTCTTCAGACTTTTCTTTACATCCAGTACAAGCCAAAGAAAAAATTTCTCAGCTAACTTTCAACTGCTCTATTTGCGACATAATTTTTGATTCAAAGCAAAAATGGGCTACACATATGAAAATTCATCAAGAACCAACACATCAATGTCCAAAATGTGATCGAAAATTCAAGTCAGAGAAAAATATAGCTAAACATGAGTGTGCAATTTGCAGTATTTGTGGTCATAAAAGTGCTTCAAAAAGCGAGCTAAAGATTCACATCAAACAAGAACATAATGAAGCTGCAAACAAAATTTACACAGTTCAATGCGATTATTGTGGCAAATATATAAAAACTAAAACTTATTTGATCCATCATATTAGAGCTCTACATGTAAAAGATGAAAAATCTCAACTTTTGTGTACTTTGTGTGGTTCAAAAGTTCGTAATAAATTTTTACTTGATAAACATATGCTAATAGAACATTCAGAAATGATCAGTTGTAAATTATGTGGAAAAATGGTGAAACCTCTCTGCATGCCTTATCATATGAGACAAGTTCATGCAAGTGAAAGAAATTTTGTCTGCACTGTTTGTTTTGCTTCTTTCAAGACATTATCAAATTTTAAAGATCACATGAAAACTCATAACAAATCTTATGCTTGTGATCTTTGTGATAAAGTTTATGCTCGTCCAGATCATCTTAGAGAGCATAGAATTCTTCATTATGATCCAAATGCTTATTCATGTCAAGTTTGCGATCGTCATTTTACTACAAAAGGATATTTACAAAGACACATGAAAGCACATGAGGAAAGCAATGTAAAATGTAAAATTTGTGGTGTCGATGTCAATGCTTTGAGTCTTCATTATCATATGAAAAATTCTCATCCACTTGATCGATTTAAATGTCACAAATGTGATGCAACTGGATTTGCAACTCAAAGAGAATTTAGTGAACATTTAAGAATACATGAAAAAGAAAGAGTTGAAATTGAGCAGATTACAAAAGAAAATTCGAAAAGAGAAAAGAAAAATGAAATTATGGAAAGAGAAAAAGAAGAAATGCAAGCAATAGCAAATATTAAAGCTCAAAATAATGAAATTGAAAGTTTGAATAAAAACAATGAAGAGAATTCAGTAATTAGAAAAAATACAAAAGAATTAAAGAAATTTAATATTAAGAGAGATGAAGAAGTTTCTAAAAATTACAAAAATAAAAATGAACTCTTTGAAAAGAAACAAATAAACCTTCAACAAACAAAAGAGACTAAATCATCAATAAAACGAACTAAAGAAGCTGAAAGAAATCAAGAATGCAGAAAAGTTTTGATTGCATCAGAAGAAAATCTTGAAGAAAGTCAAGATGAAAATTCTTTTGATGGATTTGAAAATGAAGCTGATGATATGGACTGGAATTATGATTCTCCAAATGAGCTTTTACAACAAGAAATCGAGCCTCAAATCATTCCAAAAATTGAAATTAAAGAAGAAAAAACAAATTCAGTCACAATTGAGCAAATTCAAAATTTATTCGACACAATTTCAAAGCCAAGAAAAAGATCTAAAAAAATAAAAAGTCTTGAACCGCAGCCTCGTTTCATTTTAATACCAAAAAATTCAATTGTGACTTGTGATTTATGTGGTGAAAATTTTAATAAGAAAAAGAAATTGATTTCACACTTAAGACAACATTTGAGAGAAAATGAAATTAATCAATGTCAAATTTGTTTTAAAATTTTTGCCACTCAATCAATTTTGGAAATTCACATGAGATCGCATATTGAGATGACAATTCCTTGTGAAATCTGTGGAAAGCAAGTAAAACCGCAATGTATGATTAATCATATTAGACAAGTTCACACGACAATAAAAACTCTTGAATGTGAAATTTGTGGAAAACTTTTCAAGACTAAGCAAAATTTACGTGAACATTTAAAGCATCATAATAAAGCTTTTCAGTGTGCAGTTTGTGGTCGAAAATTTCCACGCAGTACTGATTTAAAAGAACATATGATTAGTCATGATAATCCTGAAGCTCTTGAATGTCCTCATTGTAAACTTCGACTTGCTGATAGAAGATTGTTAACTAAACATATTGCAAACTTACATTTAGAGAGATCAAATGGAATAAAAGTGAAGCAAGAGAAAAAATACAAATGTGAACTTTGCGATTATTCTTGTATTCAAAAAGGAAATTTGAAAATTCATTACAAAAGACATGAAAAATATGAAGCGAGACTTAGAGCAAATCCTGATGCATTGAAATGTGAAATTTGTGAAGCACTCTTTAAGTCTGAATTGATATTAAAAATTCACATGCAAAAAGTTCACTCCGAAGAAAGATTTCCATGTGAACATTGTGGAAAAGTGCTCAAAACTAATAACAGTTTGTGGTCACATTTAAGAAAAATTCATCAAGTTGAGCCTGAGAAAAAAAAGAAAAAAGAAAAGCCAGTAAAGATTGAAGGTGAAAAAAAGAAAAGACGAAAGAGAAGAAAAAGAAATGAAGCTGGTGAACTTGTAGAAAGAGAAGAAATTGAAAATGCCGTGAATGTTATTGAGGTTCATAGTGTTAATCATATGGAATTTTATTAA
- Protein Sequence
- MTTVIENTIFIKTEPEEIIENDDDTPNINFSSDIIKKEKIENTKTQNSKSNKKNSQQEKKKIKEKVTGNSFKQSKEKVHKETKTPKSKQNEINKNNKNKSPRRNRKDSKNIKSEENIEQNKSSKIKSSSNTERNSSDFSLHPVQAKEKISQLTFNCSICDIIFDSKQKWATHMKIHQEPTHQCPKCDRKFKSEKNIAKHECAICSICGHKSASKSELKIHIKQEHNEAANKIYTVQCDYCGKYIKTKTYLIHHIRALHVKDEKSQLLCTLCGSKVRNKFLLDKHMLIEHSEMISCKLCGKMVKPLCMPYHMRQVHASERNFVCTVCFASFKTLSNFKDHMKTHNKSYACDLCDKVYARPDHLREHRILHYDPNAYSCQVCDRHFTTKGYLQRHMKAHEESNVKCKICGVDVNALSLHYHMKNSHPLDRFKCHKCDATGFATQREFSEHLRIHEKERVEIEQITKENSKREKKNEIMEREKEEMQAIANIKAQNNEIESLNKNNEENSVIRKNTKELKKFNIKRDEEVSKNYKNKNELFEKKQINLQQTKETKSSIKRTKEAERNQECRKVLIASEENLEESQDENSFDGFENEADDMDWNYDSPNELLQQEIEPQIIPKIEIKEEKTNSVTIEQIQNLFDTISKPRKRSKKIKSLEPQPRFILIPKNSIVTCDLCGENFNKKKKLISHLRQHLRENEINQCQICFKIFATQSILEIHMRSHIEMTIPCEICGKQVKPQCMINHIRQVHTTIKTLECEICGKLFKTKQNLREHLKHHNKAFQCAVCGRKFPRSTDLKEHMISHDNPEALECPHCKLRLADRRLLTKHIANLHLERSNGIKVKQEKKYKCELCDYSCIQKGNLKIHYKRHEKYEARLRANPDALKCEICEALFKSELILKIHMQKVHSEERFPCEHCGKVLKTNNSLWSHLRKIHQVEPEKKKKKEKPVKIEGEKKKRRKRRKRNEAGELVEREEIENAVNVIEVHSVNHMEFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -