Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00062 0.67 10.0 4.2 18 44 41 64 33 64 0.92

2 10 0.0061 6.6 6.8 4.3 19 44 72 94 66 94 0.91

3 10 0.034 36 4.4 6.6 18 44 128 148 121 148 0.93

4 10 0.00069 0.75 9.8 4.4 10 39 147 173 145 181 0.71

5 10 0.0038 4.1 7.5 2.1 14 40 177 200 172 203 0.85

6 10 0.00042 0.45 10.5 0.8 13 40 204 228 200 236 0.84

7 10 0.087 94 3.1 2.5 13 40 234 258 228 260 0.73

8 10 3 3.3e+03 -1.8 0.6 12 23 263 274 253 277 0.75

9 10 1.2e-06 0.0013 18.7 1.3 2 43 282 320 281 321 0.86

10 10 0.34 3.7e+02 1.2 2.1 17 43 328 351 322 352 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00062	0.67	10.0	4.2	18	44	41	64	33	64	0.92
2	10	0.0061	6.6	6.8	4.3	19	44	72	94	66	94	0.91
3	10	0.034	36	4.4	6.6	18	44	128	148	121	148	0.93
4	10	0.00069	0.75	9.8	4.4	10	39	147	173	145	181	0.71
5	10	0.0038	4.1	7.5	2.1	14	40	177	200	172	203	0.85
6	10	0.00042	0.45	10.5	0.8	13	40	204	228	200	236	0.84
7	10	0.087	94	3.1	2.5	13	40	234	258	228	260	0.73
8	10	3	3.3e+03	-1.8	0.6	12	23	263	274	253	277	0.75
9	10	1.2e-06	0.0013	18.7	1.3	2	43	282	320	281	321	0.86
10	10	0.34	3.7e+02	1.2	2.1	17	43	328	351	322	352	0.79

Coding Sequence: ATGAATCAAGAATTAAATATAAAAGTAGAAAAAGAGCGTGAATTTATTTTAGTCATAGACAACAGTGGACAAGTGACACCAAAAATTGAAAATGTGAAAAATGAAAACAAAGACGAAAAAATTTGTAGATTTTGTGATAAAAAATTTTCATGTCGATCCAAAATGAACGAACACATGAAAAGAAAACATTCTGAACATTTTAAAGTTTATTTTTGTGATCATTGTGAATTGAAATATTTTGACAAAAACTGTTTGATCAAACATTTAAAATTAAAACATAAGAAAGGAAAAGAAATCAAATTTGAGTGTGATTTTGATGGAAAAGATTTTGAGACTAAAAAACAACTTTCACAGCATATGATATGCCATTATAATGGTAAAACATGTCGAATTTGTCAGAAACATTACAAATATTTAAGCAAGCATATGAGAGAAATTCATCCATCAAATAATGAGAAATTTCAATGTAAAATCTGCAACAAAACCATCAAAAACAAAGATTATTTGAAAGTTCATCTTAAAACACACAATAAACAACATCAATGTCAAATTTGTGGTCGTAAATTTGCTTTCACCACTAAATTAAAAGAACATTTAAAAGTTCATGAAGATCGTTTTACATTTCGATGTGAAAAATGTCAGAAAAATTTTGCTTCATCGTCAGGTTTGAGAATTCATTTAAAAATTCATAACAAAAATCGTTCAAAACAATACAAATGTGAACATTGTGAATATTCAATTGATATTAAATCAAGCTTTACAATTCATCTTCGAACTCATGATAAAAATCGAGAAAAAAATTTTAAGTGTCCAAAATGTGATTATAAAACTGATCTAAATTCAAGTCTTAAGCAACATTTTAAAATTCATGAACCAAATCGAGCGAAAATTCCATGCCTGTATTGCAAATATGAAGCAACAACGAGAGGCAATTTGATAAAACATCTTAGGATAAAACATGATCCAAACAGAGTCAAACATCTCAAATGTTCTCACTGTGATTATAAAACAGATATCAAAAGAGATTTCGTAAAACATCTTAATGCACGTCATAACAAAAAATAA
Protein Sequence: MNQELNIKVEKEREFILVIDNSGQVTPKIENVKNENKDEKICRFCDKKFSCRSKMNEHMKRKHSEHFKVYFCDHCELKYFDKNCLIKHLKLKHKKGKEIKFECDFDGKDFETKKQLSQHMICHYNGKTCRICQKHYKYLSKHMREIHPSNNEKFQCKICNKTIKNKDYLKVHLKTHNKQHQCQICGRKFAFTTKLKEHLKVHEDRFTFRCEKCQKNFASSSGLRIHLKIHNKNRSKQYKCEHCEYSIDIKSSFTIHLRTHDKNREKNFKCPKCDYKTDLNSSLKQHFKIHEPNRAKIPCLYCKYEATTRGNLIKHLRIKHDPNRVKHLKCSHCDYKTDIKRDFVKHLNARHNKK

Sequence clustering based on sequence similarity using MMseqs2