Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.1e-08 2.3e-05 24.3 2.7 14 44 39 66 32 66 0.89

2 9 0.0052 5.6 7.0 0.7 18 43 75 97 68 98 0.87

3 9 0.83 9e+02 -0.0 0.1 19 40 107 125 101 130 0.70

4 9 0.094 1e+02 3.0 4.2 18 43 133 152 119 153 0.79

5 9 0.00016 0.18 11.8 9.0 10 40 152 182 146 186 0.81

6 9 0.051 55 3.8 1.0 15 40 183 205 179 208 0.85

7 9 0.63 6.9e+02 0.3 6.3 13 39 209 232 203 246 0.74

8 9 8.8 9.5e+03 -3.3 3.1 15 34 241 261 227 265 0.62

9 9 0.00055 0.59 10.1 2.2 17 44 333 357 327 357 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.1e-08	2.3e-05	24.3	2.7	14	44	39	66	32	66	0.89
2	9	0.0052	5.6	7.0	0.7	18	43	75	97	68	98	0.87
3	9	0.83	9e+02	-0.0	0.1	19	40	107	125	101	130	0.70
4	9	0.094	1e+02	3.0	4.2	18	43	133	152	119	153	0.79
5	9	0.00016	0.18	11.8	9.0	10	40	152	182	146	186	0.81
6	9	0.051	55	3.8	1.0	15	40	183	205	179	208	0.85
7	9	0.63	6.9e+02	0.3	6.3	13	39	209	232	203	246	0.74
8	9	8.8	9.5e+03	-3.3	3.1	15	34	241	261	227	265	0.62
9	9	0.00055	0.59	10.1	2.2	17	44	333	357	327	357	0.91

Coding Sequence: ATGAATCAAAAATGTGATGTTAAAATCGAGCCAGAACGTCATATTTTAGGAGTCATAACAAGCAACAATGAAGTGAGACCGAAAATTGAACCGAAAAGTAAAGAAAAAAAAATTCAAGACAAAACAGTTTGTAAGATTTGTGAGAAAAAACTTTCAAGCGGTAAAAATTTACGTCAACATATGAGAAGACTTCATTCAAGTGTTTTAGACAAAGAAATTTATTTCTGTGATCATTGTAATTTGAAATATTTTGACAAAAATTATTTGATCAAACATTTAAAGTCAAAACATCTAAAAGGAAAAGAAATCAACTTTGAGTGTGATTTTGATGGAAAAATTTTTGAAAATAAAAATCAATTTATGAGACATATGAAATATCATCGAACCGCAGTAGAAAAATGTGAAATTTGTGAGAAAGAATTCAAAAATTTAAACCAGCATATGAGTCAAGTTCATTCGTTAATTAATGAAAAAATTCAATGCAAAATTTGCAGTAAAATATTAAAAAATCAAAAATGTTTGAAATTTCATCTTCAAACGCACAATAAACAGCATCAATGTCAAGTTTGTGGACGTAGATTTTCATTGATTACTCAATTAAAAGAACACCTAAAAGTTCATGAAAATAAATTTGCTTTTAGATGTGAAGAATGTCAGAAAAATTTTTCTTCACGAAGAAGTTTAAAGTGTCATTTGAAAACTCATGACAAAGATCGACCAAAGCAGCATAAATGTCAACAATGTGATTATTCAACTGATAGAAAAGATGGTCTTACAAGTCATATTTTAACTCATGATAAAAATCGAGAGAAAAACTTTAAATGTTCAAAATGTAATTACAAAACTGATCACAAAGGATCTCTTAAGATTCATCTTCAAACACATGATCCAAATCGAAGAAAATTTCCATGTCCAGCGTGCAGTTATGAAGCAACTGACAAAAGCAGTTTGACAACACATCTCAAGAGAAAACATGATCCAAACAGAATCGAAAATCTCAAATGCTCTCATTGTGATTATAAGACAGATATAAAAGCTAATATGAAAAGACACATTGAAACTCGACATAACAAAAACTGA
Protein Sequence: MNQKCDVKIEPERHILGVITSNNEVRPKIEPKSKEKKIQDKTVCKICEKKLSSGKNLRQHMRRLHSSVLDKEIYFCDHCNLKYFDKNYLIKHLKSKHLKGKEINFECDFDGKIFENKNQFMRHMKYHRTAVEKCEICEKEFKNLNQHMSQVHSLINEKIQCKICSKILKNQKCLKFHLQTHNKQHQCQVCGRRFSLITQLKEHLKVHENKFAFRCEECQKNFSSRRSLKCHLKTHDKDRPKQHKCQQCDYSTDRKDGLTSHILTHDKNREKNFKCSKCNYKTDHKGSLKIHLQTHDPNRRKFPCPACSYEATDKSSLTTHLKRKHDPNRIENLKCSHCDYKTDIKANMKRHIETRHNKN

Sequence clustering based on sequence similarity using MMseqs2