Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5e-06 0.0017 18.3 1.2 10 44 26 57 23 57 0.90

2 7 0.0026 2.9 8.0 2.8 3 32 92 119 90 125 0.82

3 7 0.0065 7 6.7 5.6 4 40 117 150 114 153 0.81

4 7 0.05 54 3.9 2.2 11 40 150 176 144 179 0.82

5 7 2e-05 0.021 14.8 2.7 8 41 176 205 169 218 0.81

6 7 2.6 2.8e+03 -1.6 7.6 12 41 239 265 212 268 0.88

7 7 0.019 20 5.2 1.6 16 44 272 297 261 297 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5e-06	0.0017	18.3	1.2	10	44	26	57	23	57	0.90
2	7	0.0026	2.9	8.0	2.8	3	32	92	119	90	125	0.82
3	7	0.0065	7	6.7	5.6	4	40	117	150	114	153	0.81
4	7	0.05	54	3.9	2.2	11	40	150	176	144	179	0.82
5	7	2e-05	0.021	14.8	2.7	8	41	176	205	169	218	0.81
6	7	2.6	2.8e+03	-1.6	7.6	12	41	239	265	212	268	0.88
7	7	0.019	20	5.2	1.6	16	44	272	297	261	297	0.82

Coding Sequence: ATGTCATCAACAAATTCAACAACTGAAACAAAATTTGACTTAAGTCGTGAATTTCTTTTAGTTTTAGATGATGAAAATGAAAAACAAAAGAGTGAAAATGTCTGTGAAATATGTGAGAAGAAAATGAGTTCAAAATCTAAATTATCGCAGCATATGAAAAGAATTCATTCAAATGAAATTTTATCTGCAGTTTTTTTTTCAAAACATCAAAAAGGAAAAGAAATTAAGTTTGAGTGCGATTTTGATGGAAAAATTTTTGAAACTAAAAAACAAATTTGGAGTCATATGAAAAGTCATCAAATTGAGATCAAAAGATGTGAAATTTGTGAAAAGAAAGTAAAAAATTCAAAAGAGCATATGAGACTAATTCATACTGAGAATAAAGAAATTCAATGCCATATTTGTTATAAAACTTTAAAAAATCAAAAATCTTTTAAAATTCATCTTAAAACACATAACAAAAAATATCAATGTCAAGTTTGTGGACATAAATTTGCACTGGTCAATCAACTCAAAGATCATTTAAAAGTTCATCAAGATAAATTTGCATATCGTTGTGAAAAATGTCAGAAAAATTTTAGTTTTTCGACAAATTTAATAGCTCATTTGAAAACTCATGACACAAACCGACCAAAGCCACACAAATGTCATCAATGTGATTATTCAACTGATAGTAAACAACGCCTGACAGTTCATCTTAGAACTCATGATAAAAATCGAGAAAAAAATTTTAAATGTCCAAAATGTGATTACAAAACTGATCGAAAAAATCATCTTAAGAGTCATATGCAAACTCATGATCCATATCGAGTAAAATTTCCATGTTTATATTGCGATTATGAAACAACAACAAGAAGCGGTTTGACAAAGCATTACAAAACTCAGCATAATCCAAAAAAGCATAAAAATAAGCAAGAAATATTTAATTTATGTTACAAATAG
Protein Sequence: MSSTNSTTETKFDLSREFLLVLDDENEKQKSENVCEICEKKMSSKSKLSQHMKRIHSNEILSAVFFSKHQKGKEIKFECDFDGKIFETKKQIWSHMKSHQIEIKRCEICEKKVKNSKEHMRLIHTENKEIQCHICYKTLKNQKSFKIHLKTHNKKYQCQVCGHKFALVNQLKDHLKVHQDKFAYRCEKCQKNFSFSTNLIAHLKTHDTNRPKPHKCHQCDYSTDSKQRLTVHLRTHDKNREKNFKCPKCDYKTDRKNHLKSHMQTHDPYRVKFPCLYCDYETTTRSGLTKHYKTQHNPKKHKNKQEIFNLCYK

Sequence clustering based on sequence similarity using MMseqs2