Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-07 0.00012 22.0 1.9 13 44 34 62 27 62 0.90

2 9 0.001 1.1 9.2 0.5 19 44 70 92 66 92 0.90

3 9 0.00058 0.63 10.1 4.6 2 44 113 147 112 147 0.87

4 9 0.0014 1.6 8.8 5.5 14 39 150 172 147 180 0.74

5 9 0.3 3.2e+02 1.4 2.4 14 27 176 189 165 199 0.80

6 9 0.00047 0.51 10.4 2.1 13 41 203 228 191 233 0.84

7 9 0.48 5.2e+02 0.7 0.9 16 38 236 259 228 263 0.75

8 9 1.2e-05 0.013 15.4 4.0 3 43 282 319 280 320 0.94

9 9 0.068 74 3.4 3.6 17 44 327 351 321 351 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-07	0.00012	22.0	1.9	13	44	34	62	27	62	0.90
2	9	0.001	1.1	9.2	0.5	19	44	70	92	66	92	0.90
3	9	0.00058	0.63	10.1	4.6	2	44	113	147	112	147	0.87
4	9	0.0014	1.6	8.8	5.5	14	39	150	172	147	180	0.74
5	9	0.3	3.2e+02	1.4	2.4	14	27	176	189	165	199	0.80
6	9	0.00047	0.51	10.4	2.1	13	41	203	228	191	233	0.84
7	9	0.48	5.2e+02	0.7	0.9	16	38	236	259	228	263	0.75
8	9	1.2e-05	0.013	15.4	4.0	3	43	282	319	280	320	0.94
9	9	0.068	74	3.4	3.6	17	44	327	351	321	351	0.86

Coding Sequence: ATGAATCAAGAATTAAATATAAAAGTAGAAAAAGAGCGTGAATTTATTTTAGTCATAGACAACAGTGGAGAAGTGAGACCAAAAATTGAAAATTTCAAAAATAAAAACGAAATAGTTTGTAAATTTTGTGAGAAAAAAATTTCAAGTCGATCAAATATGAGTAAACACATTAAAATAAAACATTCGGAACATTTTGAAGTTTATTTTTGCGATCATTGTGGTTTGAAATTTTTCTTCAAAAACACTTTGATAAAACATTTGAAGTCAAAACATCAAAAAGAAAAAGAAATCCAATTTGAATGTGATTTTGATGGAAAAGCTTTTGAAACTAAAAATAAACTTTTAAAACACATGACAAATCATCGTAATACAGTGAAAAAATGTGAAATTTGTGAAAAAGAAGTCAAAAATTTGAGTCAACATATGATAAAAGTTCATTCGTCAAATAATGAGAAAGTAAAATGTAAAATCTGCAACAAAAAATTGAAAAATCGATATTACATGAAAGATCATCTAAAATCACACAACAAACAACATCAATGTCAAATTTGTGGACGTAAATTTGCAATGTTTTATCTATTAAAAGAACATTTAAAAGTTCATGAAAATCGTTTTACATTTCGATGTGAAAAATGTCAGAAAAATTTTGCTTCATCGTCAAGTTTAAGAAATCATTTAAAAACTCATGACAAAGATCGATCAAAGCCACTTAAATGTCAACAATGTGAATATTCAACTGATAATAAACCAAGTCTGATATCTCATTTGAAAACTCATGACAAGAGTCGAGTAAAAGATTTTAAATGCCTAAAATGTGCTTACAAAACTGATCATAAAGGAAGTTTTAAGAAACATCTTCAAATTCATGAACCAAATCGAAGAAAATTTTCATGTTCAGTGTGCCATTACGAAGCAACTGGAAAAAACAATTTAAAAAATCATCTCAAAAGAAAACATGATCCAAACAGAGTCAAACACCTCAAATGTTCTCATTGTGATTATAAAACTGATATCAAAAGAGATCTTGCTAAACATCTTAATAGACGACATAACAAGAAATAA
Protein Sequence: MNQELNIKVEKEREFILVIDNSGEVRPKIENFKNKNEIVCKFCEKKISSRSNMSKHIKIKHSEHFEVYFCDHCGLKFFFKNTLIKHLKSKHQKEKEIQFECDFDGKAFETKNKLLKHMTNHRNTVKKCEICEKEVKNLSQHMIKVHSSNNEKVKCKICNKKLKNRYYMKDHLKSHNKQHQCQICGRKFAMFYLLKEHLKVHENRFTFRCEKCQKNFASSSSLRNHLKTHDKDRSKPLKCQQCEYSTDNKPSLISHLKTHDKSRVKDFKCLKCAYKTDHKGSFKKHLQIHEPNRRKFSCSVCHYEATGKNNLKNHLKRKHDPNRVKHLKCSHCDYKTDIKRDLAKHLNRRHNKK

Sequence clustering based on sequence similarity using MMseqs2