Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1e-07 0.00011 22.1 0.8 13 43 34 61 27 62 0.89

2 11 0.00032 0.34 10.9 2.4 19 44 70 92 64 92 0.89

3 11 0.65 7e+02 0.3 0.1 16 38 98 121 95 123 0.77

4 11 0.004 4.3 7.4 4.8 4 44 115 147 112 147 0.83

5 11 0.0025 2.7 8.0 6.5 10 40 146 173 140 180 0.74

6 11 0.075 82 3.3 4.8 13 40 175 199 166 201 0.82

7 11 0.0049 5.3 7.1 4.7 12 40 202 227 193 235 0.83

8 11 0.075 81 3.3 2.4 18 41 238 258 230 259 0.75

9 11 0.015 16 5.5 2.5 13 41 263 288 258 291 0.89

10 11 0.00027 0.29 11.1 1.7 14 43 293 319 289 320 0.91

11 11 0.11 1.2e+02 2.8 0.7 35 44 340 349 328 349 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1e-07	0.00011	22.1	0.8	13	43	34	61	27	62	0.89
2	11	0.00032	0.34	10.9	2.4	19	44	70	92	64	92	0.89
3	11	0.65	7e+02	0.3	0.1	16	38	98	121	95	123	0.77
4	11	0.004	4.3	7.4	4.8	4	44	115	147	112	147	0.83
5	11	0.0025	2.7	8.0	6.5	10	40	146	173	140	180	0.74
6	11	0.075	82	3.3	4.8	13	40	175	199	166	201	0.82
7	11	0.0049	5.3	7.1	4.7	12	40	202	227	193	235	0.83
8	11	0.075	81	3.3	2.4	18	41	238	258	230	259	0.75
9	11	0.015	16	5.5	2.5	13	41	263	288	258	291	0.89
10	11	0.00027	0.29	11.1	1.7	14	43	293	319	289	320	0.91
11	11	0.11	1.2e+02	2.8	0.7	35	44	340	349	328	349	0.77

Coding Sequence: ATGAATCAAAAATTAAATATAAAAGTAGAAAAAGAGCGTGAATTTATTTTAGTCATAGACAACAACGATCAAGTAAGACCAAAAATTGAAAAAGTTAAAAATGAAAACGAAAATGCTTGTAAATATTGTGAAAAAAAATTTTCGTTTCAAACGGGTATGATCAAACATATGAAAACAAAGCATACTGAGAATTTTAAAGTTTATTTCTGTGATCATTGTGACTTAAAATTTTTTAGCAAAAATTGTTTGATCAAACATTTGAAAACAAAACATCAAAAAGGAAAAGAAATCAAGTTTGAGTGCGATTTTGATGGGAAAATTTTTAAAAGAAAATATAGTCTTTTAAATCATATGAAAAATCATCAAACTGGGATCAACAAATGTAAAATTTGTGGCAAAGAATTCATAAATTTGAATAAACATATGACAAAAACTCATCCGTCAAATGATGAAAAAGTTCAATGTGAAATTTGCAACAAAACATTCAAGAATCAAAATTATTTGAAAATTCATCTTAAGACACACAACAAGCAACATCAATGTCGAGTGTGTGGACATAAATTTGCAAGAGTTCAACATTTAAAAGAACATTTGAAAGTTCATGAAGATCGATTTACATTTCGATGTGAAAAATGTCAGAAAAATTTTAATCATTCATCAAGTTTAAAATCGCATTTGAAAATTCACGACAAAAATAGATCAAGGCCACTTAAGTGTCAACATTGTGATTATTCGACTGATAGGAAACATAGTTTAACAGCTCATCTTAGAACTCATGATAAAAATCGTGAAAAGACTTTCAAATGCTCAAAATGTGATTATAAAACTGATCGAAAATCAAATTTAAAGATTCATCTTCAAACTCATGATCCATATCGAACAAAATTTCCTTGTTTATATTGCAGTTATGAAGCAACTCGAAGAAGTAGTTTGACAAAACATCTCAAAAGAAAACATGATACAAACAGAGCCAAACAGAGCTCTCATTGTGAGTACAAGACAGACATCAAAAGAGATTTTACTAAACATCTTAATAGACGACATAGCAAGAAATAA
Protein Sequence: MNQKLNIKVEKEREFILVIDNNDQVRPKIEKVKNENENACKYCEKKFSFQTGMIKHMKTKHTENFKVYFCDHCDLKFFSKNCLIKHLKTKHQKGKEIKFECDFDGKIFKRKYSLLNHMKNHQTGINKCKICGKEFINLNKHMTKTHPSNDEKVQCEICNKTFKNQNYLKIHLKTHNKQHQCRVCGHKFARVQHLKEHLKVHEDRFTFRCEKCQKNFNHSSSLKSHLKIHDKNRSRPLKCQHCDYSTDRKHSLTAHLRTHDKNREKTFKCSKCDYKTDRKSNLKIHLQTHDPYRTKFPCLYCSYEATRRSSLTKHLKRKHDTNRAKQSSHCEYKTDIKRDFTKHLNRRHSKK

Sequence clustering based on sequence similarity using MMseqs2