Ppem011648.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010001410.1:3519-4037[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-09 7.5e-06 25.5 0.1 2 44 16 58 15 59 0.92 2 2 5.5 8.7e+03 -3.5 0.0 4 10 153 159 152 160 0.74
Sequence Information
- Coding Sequence
- ATGGAGAGCAAGATTAATAAAAGAACAAAATATAAACAGTATGGCGAAGATGCAATAATTGCAGCTGTAGAAGAGGTAAAAAACAAAACATCAAGTCTTCGCAAAATTGCATTGAAATATAAAATACCAAGAACAACTATAATGAATCGTTCAAAAAATAATGAAACGAAAAAGCAAGGCCGAAAGACAATTCTAAATGAGAATGAAGAGAAAGAAATAGAAAACTGGTTGATTGAATGGAAAGAAAAAGGAGAAAAAAGAACTCGCAAGGAACTTTTGATTGCAGCAAAAGACACTCTTAGCTTAAGAAATGATCCAAAAGCAAAATTTCAAAATAAACTTCCTTCTATTAAATGGTTAAAAAGTTTCCTAAAACGACATCCACGAATTACAGAAGAACAAGCACTAATCAATGCAAATATAAGAAGAATCAAAATTAAAAAAGAAGAAGATAACAATTTAAATGAAGCAGTACAAAACCAAAAAGAGGACGTTCAAAAACAAATAAATGATTTATGA
- Protein Sequence
- MESKINKRTKYKQYGEDAIIAAVEEVKNKTSSLRKIALKYKIPRTTIMNRSKNNETKKQGRKTILNENEEKEIENWLIEWKEKGEKRTRKELLIAAKDTLSLRNDPKAKFQNKLPSIKWLKSFLKRHPRITEEQALINANIRRIKIKKEEDNNLNEAVQNQKEDVQKQINDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -