Ppem015977.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010000166.1:15663-17714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.1e-05 0.096 12.4 0.0 5 39 273 308 269 312 0.87 2 3 0.016 26 4.6 0.0 22 35 337 350 324 359 0.81 3 3 1.7e-09 2.7e-06 26.9 0.0 2 38 377 412 376 416 0.92
Sequence Information
- Coding Sequence
- ATGTCGTTCGTAATTAACACGACAATTGATAAAAATAAAGAATTCATTGAAGCTTTGCGAAATTCATTACATAATGATGTCGAGAAAGATATTAATTTTATTTGCAAAAATAATGTCAAAGTTACGATGAATAGTTATGTGCTAGCACTTGCAAGTGAATTCTTCAGTGAGCTTTTAAGAGATATTGTTGATAAGCGGGAAGTTATTACAATCATGGTGCCGGATATTCATCCAGATGTATTGAAAAAGGTTTTTGAATACATTTATATAGGATATGTTGCATTAGAGACTAGAGCTATGGGTGAATTCATTGAAGCTTGCAATCTTCTTCATCTCAAAGCAACAATAAGTTGTGAAAAGAAACTCGTCTTTGATTCACCAATAACAACAACGGCTACTCCAGTTACTTCAGGTATCACAACAGTGATCACCGACTTTAATCCATCAATAAAGTTTGATACTACTAGCACCACTAACGTTGTAGAAGAACCAACTGAACATGTTGACATTCAGCAAGCTGACCATGCAACAAGTGGGCAAATTCTTGAAGTTTATGAGATTTCAAATATTGAAGATACAGACATAACTTACGATGATACAATGGAAGAAGAAGATGAGGAACATTATGAGCTGCTAAATGTCATACCCGAAAGTGAAGTTTCATCACCAACTACTGCTGCTTCTGCTACTGCTAGTACAAGTGATGCTGCTGAGAAAAAAAAGGAAAAGAAAAAACGAACATTGCTTGAAATTGCTGATGTTAGTCCAAAAACATCGACACCAAAAATGACTTCAAAAACAATTGATGAATCAGTGATGGAACAAGCGATTAAAGAAATTATTTCAAACAATAGCAGCTTCCGAGTAATCAGTGAAAAATACAGCATCCCAAAAACACTTCTCTGGAGAAGAGCAAAGAAATATGGATATGTAAAAACAGAGAAGCCAAAAGATGATGTTAGACTCATGGCAATTGAATCATTGAAGCAAGGTGAAAGTCTTATTAGTCTTAGCAAACGTTATAAAATTCCGATCTCAACATTGCATCGTGAAAAACTGAAATTATATGAAAAAGGTCAACTGCCTGAAAATGTCAACCTTAAGAATCGAACAAGAGGTGAAGACTACGATGATCGCCTTCGACATGCTATTTCGGAAATTTTAAATGGAAAGAGTCAGAATGAAATTGCCAAAAAGTACAACATACCTAAAACAACAATTTGGAGAATAATTAAGAAAATGGGTGGAAAAATTGATACTTCTGCTAATCCAGTGACACCAAATTCTGAAATTGTTGAGCATTTACTTGAAATGAGCAAGAAAAGAGCAGTGAAGGATGGTCAAGGTTATGATGATGATGAAAAAATGTAA
- Protein Sequence
- MSFVINTTIDKNKEFIEALRNSLHNDVEKDINFICKNNVKVTMNSYVLALASEFFSELLRDIVDKREVITIMVPDIHPDVLKKVFEYIYIGYVALETRAMGEFIEACNLLHLKATISCEKKLVFDSPITTTATPVTSGITTVITDFNPSIKFDTTSTTNVVEEPTEHVDIQQADHATSGQILEVYEISNIEDTDITYDDTMEEEDEEHYELLNVIPESEVSSPTTAASATASTSDAAEKKKEKKKRTLLEIADVSPKTSTPKMTSKTIDESVMEQAIKEIISNNSSFRVISEKYSIPKTLLWRRAKKYGYVKTEKPKDDVRLMAIESLKQGESLISLSKRYKIPISTLHREKLKLYEKGQLPENVNLKNRTRGEDYDDRLRHAISEILNGKSQNEIAKKYNIPKTTIWRIIKKMGGKIDTSANPVTPNSEIVEHLLEMSKKRAVKDGQGYDDDEKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250303;
- 90% Identity
- iTF_01249309;
- 80% Identity
- iTF_01249309;