Piph018523.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730184.1:12343349-12345684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 12 7.6 3.8 2 23 98 119 97 120 0.94 2 12 2.2e-05 0.0021 19.4 2.1 1 23 126 149 126 149 0.97 3 12 0.0001 0.0099 17.3 2.2 1 23 163 185 163 185 0.99 4 12 0.0041 0.39 12.3 6.5 1 23 191 213 191 213 0.98 5 12 0.012 1.2 10.8 1.4 1 23 219 242 219 242 0.96 6 12 0.8 76 5.1 0.7 2 21 251 270 250 271 0.92 7 12 0.68 65 5.3 5.8 1 23 384 406 384 407 0.93 8 12 1.1 1e+02 4.7 2.7 1 20 415 434 415 436 0.91 9 12 0.86 82 5.0 5.5 2 23 444 466 443 466 0.96 10 12 0.0013 0.12 13.9 5.3 1 23 469 492 469 492 0.97 11 12 0.12 12 7.6 2.2 2 23 498 519 497 519 0.87 12 12 0.00012 0.011 17.1 0.9 1 23 525 548 525 548 0.98
Sequence Information
- Coding Sequence
- ATGTCTGATGAAGAATCAATGGATGAACCTTTGAGGCAGTCGGAAAGCTTAAAGCCGACAACAGTTGGTTCGGAAGAGCCAAAGGATGGCTTAGATGATTTAATGGTTGAGTTGGATTCAGATGAAGCATCTGCAAATGAGAAGGACATGATGAGTATGTTTGCCAGTGTGTGGGTGAAGGTGGAAGTTGAGGAGGACTCTAATCCTAACATGGCGATTAACTTAAACAGatttgatgatgatgatgtaaaTACAAGAAGTTCAGGAAAGAAAAAACCTAACAAAGTTTTAAAATGTGATCAATGTGAGTATACAACAGGTTACAAGAATTGTTTGAACATGCACATACTCAGCCACCACACGGACGACCGGCCGTACTCCTGCCACTACTGCGGGTACACCACCAAGTACCCCACCTCCCTCAGTCGCCACATACTCATTCAGCACGAACTGAAGGACATGCCACAGGACGGTCAGAATAATGTTTACAAGTGTAACGATTGCGACTACACTTCACAGTTCAAATGGAACTTGAATGCTCATAAAAGAAAGCACAAGCTGGTCAAACAGTTTAAATGCCCCCAGTGCGACTACTGCACGGCTTACAGACATAACTTTATGAAGCACAGCAAAGTCCACACCGAGGGGATATTCTTCAAATGTGACAAATGCCCCTTCGTGACGCGCTTCGAAGGACATATCACTAGACATTTGGCCAAAATACACAATGTAGTGAGTGAAAAAGCTTCCAGATGTGACCTTTGTGATTTTTCAACAAAGGTCCGTTGGAGGCTCAATACCCACAAGCAAAGGAGTAAACAAGAGAAGGCTTTGCACTGTCCGTACTGTGATTTTGTAACATTCTACATGTGTGAAAGTAAAAAACATAAAGCTACACATTATAACAAAATTTATGGTACACCCGCCAGCCATAAAGTTCAACAGAACTCATTCACACCTACTATTACTAATCCAATTGATAAGTTGGAACCTCAATCTCAACCACCGACCCCCGTTTGCCGAGAAATGGAGCCCCCTACTAGCAGTCACGGCAAAAAGAGGGGTTCAAATCAAAACTATAAATTAGATCCTGATTGTCTGGATTGGAACAGCATTCAAGTTATTGAGTCTGAAGATAGGGAGAAGCCGTTCCTCTGCCACATGTGCTCCTACACTTCTAAATTTAAAGCAGCAGTCCAGAGACATTTCCAGAGACACCACACCGGCACAACAAACAAACCGTACAAGTGTTGTAACTGTGAATTTTCCACCAAAACTAAAGACCAGATAGCACTGCACAACAAGAGAAGTATATCCGAGCATCTGATGGTGTGCAAAACTTGCGGCTTCACTACACACTACAAGTGTCAATATGTGTCCCATCAGAAGCGGGTACACTACGAATTCAAGTGCATGACGTGCTCCTACACATGCCGACAAAAGTATGAATTACAAAAGCACTATGCCACCATGCACCTCGGGAATGGACTTAAATGTAAATATTGTGACTACACATCCGCTAGAAAGGAGAGTTTACTCTGTCACGAGACCATTCACACGGGGGACAAACCCTTCAAATGTTCCCTGTGTCCGTACATGTCCATCAGAAGATCTCTACTCGAGAACCACATAAAGAGATATCATAGTGAACAAACTAAGAATATTACAATTATAAGTGATGATAAGATAGAATCTTTGAAGGTATCTCTGCCTCCAGAAACATTTGCTTCGGGTGTGGCTTGTGAGAGCAAATAG
- Protein Sequence
- MSDEESMDEPLRQSESLKPTTVGSEEPKDGLDDLMVELDSDEASANEKDMMSMFASVWVKVEVEEDSNPNMAINLNRFDDDDVNTRSSGKKKPNKVLKCDQCEYTTGYKNCLNMHILSHHTDDRPYSCHYCGYTTKYPTSLSRHILIQHELKDMPQDGQNNVYKCNDCDYTSQFKWNLNAHKRKHKLVKQFKCPQCDYCTAYRHNFMKHSKVHTEGIFFKCDKCPFVTRFEGHITRHLAKIHNVVSEKASRCDLCDFSTKVRWRLNTHKQRSKQEKALHCPYCDFVTFYMCESKKHKATHYNKIYGTPASHKVQQNSFTPTITNPIDKLEPQSQPPTPVCREMEPPTSSHGKKRGSNQNYKLDPDCLDWNSIQVIESEDREKPFLCHMCSYTSKFKAAVQRHFQRHHTGTTNKPYKCCNCEFSTKTKDQIALHNKRSISEHLMVCKTCGFTTHYKCQYVSHQKRVHYEFKCMTCSYTCRQKYELQKHYATMHLGNGLKCKYCDYTSARKESLLCHETIHTGDKPFKCSLCPYMSIRRSLLENHIKRYHSEQTKNITIISDDKIESLKVSLPPETFASGVACESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00404269;
- 90% Identity
- iTF_00404269;
- 80% Identity
- -